View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3434_high_5 (Length: 466)

Name: NF3434_high_5
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3434_high_5
NF3434_high_5
[»] chr4 (4 HSPs)
chr4 (202-422)||(53171450-53171670)
chr4 (16-173)||(53171246-53171403)
chr4 (16-173)||(56461317-56461474)
chr4 (16-134)||(23808941-23809058)
[»] chr7 (3 HSPs)
chr7 (16-173)||(19277917-19278074)
chr7 (16-173)||(47679867-47680025)
chr7 (16-120)||(5828002-5828110)
[»] chr1 (7 HSPs)
chr1 (16-173)||(28040330-28040487)
chr1 (16-173)||(19036174-19036329)
chr1 (16-173)||(37201001-37201158)
chr1 (62-173)||(972450-972561)
chr1 (57-173)||(7435135-7435251)
chr1 (16-99)||(7794194-7794277)
chr1 (16-117)||(22375352-22375453)
[»] chr2 (6 HSPs)
chr2 (16-150)||(9684640-9684773)
chr2 (20-173)||(20141947-20142100)
chr2 (20-137)||(41867146-41867263)
chr2 (31-173)||(28225794-28225936)
chr2 (20-121)||(19161082-19161183)
chr2 (136-173)||(8588932-8588969)
[»] chr6 (6 HSPs)
chr6 (16-173)||(32120675-32120831)
chr6 (16-173)||(10402476-10402632)
chr6 (16-152)||(34305245-34305381)
chr6 (16-114)||(32116382-32116479)
chr6 (70-156)||(22986723-22986809)
chr6 (70-156)||(23801585-23801671)
[»] chr5 (3 HSPs)
chr5 (16-173)||(434041-434198)
chr5 (16-121)||(27337441-27337546)
chr5 (16-116)||(15291282-15291382)
[»] chr3 (5 HSPs)
chr3 (16-173)||(29862549-29862705)
chr3 (16-173)||(49018700-49018856)
chr3 (19-106)||(52411174-52411261)
chr3 (91-173)||(6252442-6252524)
chr3 (93-156)||(6174346-6174409)
[»] chr8 (6 HSPs)
chr8 (16-116)||(37517837-37517938)
chr8 (16-173)||(25021002-25021161)
chr8 (16-173)||(24125775-24125923)
chr8 (16-148)||(4700388-4700520)
chr8 (56-120)||(10950454-10950518)
chr8 (56-120)||(10958459-10958523)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 202 - 422
Target Start/End: Original strand, 53171450 - 53171670
Alignment:
Q  202 gtcaatttaatccctaaaatcttaataacaagaaccaaattgataggttttatatattaaagagtggttattaattaagtccacactaattaagaaaatc 301  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  53171450 gtcaatttgatccctaaaatcttaataacaagaaccaaattgataggttttatatattaaagagtggttattaattaagtccgcactaattaagaaaatc 53171549  T
Q  302 aaaagtaaaatttttgtattagaaaaaacgacttttgaacttctaaaatgttgaatgcaacattttgttatgcaaaaattttatatttattttaacaatg 401  Q
    | ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53171550 agaagtaaaaaatttgtattagaaaaaacgacttttgaacttctaaaatgttgaatgcaacattttgttatgcaaaaattttatatttattttaacaatg 53171649  T
Q  402 ttctgagagcattaattaaca 422  Q
    |||||||||||||||||||||    
T  53171650 ttctgagagcattaattaaca 53171670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 53171246 - 53171403
Alignment:
Q  16 atccaaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaa 115  Q
    |||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||| |||||||||||| ||||||||    
T  53171246 atccaaaatattatcaaaatccgagttcatgccacataacccactgtctctcaaaatatgatcttgtagcacctaagattgtgccctagaagccacaaaa 53171345  T
Q  116 gcgtacaaagaaacctctaatgttgagtacaaacccaaccctccaaacctaataggta 173  Q
    || |||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  53171346 gcttacaaaaaagcctctaatgttgagtacaaacccaaccctccaaacctaataggta 53171403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 56461474 - 56461317
Alignment:
Q  16 atccaaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaa 115  Q
    |||||||||||||| ||||||  ||| ||| |||||||  ||||||||||||||||||||||||||||||| |||||| || ||||||||| ||||||||    
T  56461474 atccaaagcattattaaaatctaagtgcataccacatatcccactgtctctcaaaatatgatcttgtagcacccaagattgcgccctagaagccacaaaa 56461375  T
Q  116 gcgtacaaagaaacctctaatgttgagtacaaacccaaccctccaaacctaataggta 173  Q
     ||||||||||| |||||  || ||||||||||||||||| |||||||||||||||||    
T  56461374 acgtacaaagaagcctctgctgctgagtacaaacccaaccttccaaacctaataggta 56461317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 23809058 - 23808941
Alignment:
Q  16 atccaaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaa 115  Q
    |||||||||| | | |||||| |||| |||  ||| || ||||||||||||||| |||||||||| || || |||||| || |||||| || | ||||||    
T  23809058 atccaaagcaatgtgaaaatcggagtccatatcacttattccactgtctctcaatatatgatctt-tatcacccaagattgggccctacaagctacaaaa 23808960  T
Q  116 gcgtacaaagaaacctcta 134  Q
    || ||||| ||||| ||||    
T  23808959 gcatacaaggaaacttcta 23808941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 5e-60; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 19277917 - 19278074
Alignment:
Q  16 atccaaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaa 115  Q
    |||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  19277917 atccaaagcactatcaaaatccgagtccatgccacataacccactgtctctcaaaatatgatcttgtagcacccaagactgtgccctagaaaccaccaaa 19278016  T
Q  116 gcgtacaaagaaacctctaatgttgagtacaaacccaaccctccaaacctaataggta 173  Q
    |||||| |  || ||||||||| |||||||||||||||||||||||||||||||||||    
T  19278017 gcgtacgagaaagcctctaatgctgagtacaaacccaaccctccaaacctaataggta 19278074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 47679867 - 47680025
Alignment:
Q  16 atccaaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaa 115  Q
    ||||||| ||||||||||||| |||| ||| | |||||   |||||||||||||||||||||||||||||| |||||||||  ||||||||  |||||||    
T  47679867 atccaaaacattatcaaaatctgagtccatacgacatatcacactgtctctcaaaatatgatcttgtagcatccaagactgcaccctagaagtcacaaaa 47679966  T
Q  116 gcgtacaaagaaacctctaatgttgagtacaaacccaaccctcc-aaacctaataggta 173  Q
    | || ||| || |  |||| || |||||||||||| | ||| || ||||||||||||||    
T  47679967 gtgtgcaaggagatgtctactgctgagtacaaacctagcccccctaaacctaataggta 47680025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 5828002 - 5828110
Alignment:
Q  16 atccaaagcattatcaaaatccgagttcatg----ccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccac 111  Q
    |||||||||||||||||||| ||||| |||     |||||||   |||| ||||||||||||||||||||||||  |||||| || |||||||||  |||    
T  5828002 atccaaagcattatcaaaattcgagtccatatataccacatatctcactatctctcaaaatatgatcttgtagctcccaagattgcgccctagaagtcac 5828101  T
Q  112 aaaagcgta 120  Q
    |||||||||    
T  5828102 aaaagcgta 5828110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 28040487 - 28040330
Alignment:
Q  16 atccaaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaa 115  Q
    |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| ||||||||||  | ||||||||||||| ||||| ||||||||    
T  28040487 atccaaagcattatcaaaatccaagtccatgccacataacccactgtctctcaaaatttgatcttgtatgacccaagactgtgccttagaagccacaaaa 28040388  T
Q  116 gcgtacaaagaaacctctaatgttgagtacaaacccaaccctccaaacctaataggta 173  Q
    | |||| | ||| ||| ||||||| ||||||||| |||||||||||||||||||||||    
T  28040387 gtgtacgaggaagcctataatgtttagtacaaactcaaccctccaaacctaataggta 28040330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 19036174 - 19036329
Alignment:
Q  16 atccaaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaa 115  Q
    ||||||||||||||||||||| |||| |||||||  ||| | | ||||||||||||||||  ||||||||| |||||||| |||||||||| ||||||||    
T  19036174 atccaaagcattatcaaaatctgagtccatgcca--taacctattgtctctcaaaatatgtccttgtagcacccaagactatgccctagaagccacaaaa 19036271  T
Q  116 gcgtacaaagaaacctctaatgttgagtacaaacccaaccctccaaacctaataggta 173  Q
    |||    ||||| |||  || | | |||||||||||||||||||||||||||||||||    
T  19036272 gcgggtgaagaagcctacaaagctcagtacaaacccaaccctccaaacctaataggta 19036329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 37201001 - 37201158
Alignment:
Q  16 atccaaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaa 115  Q
    |||||||||||||| ||||  ||||| |||  ||| ||  ||||  |||||||||||||||| || ||||| | ||||||||||| || || ||||||||    
T  37201001 atccaaagcattataaaaaatcgagtccataacacttatcccaccatctctcaaaatatgatattttagcacctaagactgtgccttataagccacaaaa 37201100  T
Q  116 gcgtacaaagaaacctctaatgttgagtacaaacccaaccctccaaacctaataggta 173  Q
    ||||   | ||| |||||| || |||||||||||||||| | ||||||||||||||||    
T  37201101 gcgtttgaggaatcctctactgctgagtacaaacccaactccccaaacctaataggta 37201158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 972450 - 972561
Alignment:
Q  62 tctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaagcgtacaaagaaacctctaatgttgagtacaaacccaaccctccaa 161  Q
    ||||||||||| ||||||||||||| |||| | |||||||| ||| |||||||||||||  || || ||| || ||  ||||| |||||||||||   ||    
T  972450 tctctcaaaatttgatcttgtagcacccaatattgtgccctggaagccacaaaagcgtatgaaaaagcctttactgccgagtataaacccaaccccttaa 972549  T
Q  162 acctaataggta 173  Q
    ||||||||||||    
T  972550 acctaataggta 972561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 173
Target Start/End: Original strand, 7435135 - 7435251
Alignment:
Q  57 cactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaagcgtacaaagaaacctctaatgttgagtacaaacccaaccc 156  Q
    ||||||||||||||||||||||||||||||   |||| || | ||| ||| | |||||||||||  | |||||||||| |    |||||||||||||| |    
T  7435135 cactgtctctcaaaatatgatcttgtagcacgaaagattgggtcctggaagcaacaaaagcgtatgaggaaacctctacttcctagtacaaacccaacgc 7435234  T
Q  157 tccaaacctaataggta 173  Q
     |||||| |||||||||    
T  7435235 cccaaacttaataggta 7435251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 7794277 - 7794194
Alignment:
Q  16 atccaaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgc 99  Q
    ||||||| |||||||||||||| |||  ||  ||||||  ||||| ||||||| ||||||||||||||||| |||||| |||||    
T  7794277 atccaaaacattatcaaaatccaagtctatatcacatatcccactatctctcataatatgatcttgtagcacccaagattgtgc 7794194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 22375352 - 22375453
Alignment:
Q  16 atccaaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaa 115  Q
    |||||||||||| ||| ||||||||| ||| |||| |    || |||||||||||||||||||||| ||||  |||| |  |||||| ||||||||||||    
T  22375352 atccaaagcattctcataatccgagtccataccacttctatcagtgtctctcaaaatatgatcttgcagcattcaaggccttgccctggaaaccacaaaa 22375451  T
Q  116 gc 117  Q
    ||    
T  22375452 gc 22375453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 16 - 150
Target Start/End: Complemental strand, 9684773 - 9684640
Alignment:
Q  16 atccaaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaa 115  Q
    |||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||  |||||||||||| ||||||||    
T  9684773 atccaaagcattatcaaaattcgagtccatgccacataacccactgtctctcaaaatatgatcttgtagcacccaag-ttgtgccctagaagccacaaaa 9684675  T
Q  116 gcgtacaaagaaacctctaatgttgagtacaaacc 150  Q
    |||||  ||||| |||||||||||||||| |||||    
T  9684674 gcgtatgaagaagcctctaatgttgagtataaacc 9684640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 20142100 - 20141947
Alignment:
Q  20 aaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaagcgt 119  Q
    |||||||||||||||| ||| | |||||||||||| |||||||||||||||||||||||||||| || ||||||||||   |||||| |||||||| |||    
T  20142100 aaagcattatcaaaattcgaatccatgccacataacccactgtctctcaaaatatgatcttgtaacacccaagactgtaatctagaagccacaaaaacgt 20142001  T
Q  120 acaaagaaacctctaatgttgagtacaaacccaaccctccaaacctaataggta 173  Q
    |  || || ||||||||||||||||||||| ||||||   ||| ||||||||||    
T  20142000 atgaataagcctctaatgttgagtacaaactcaacccattaaatctaataggta 20141947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 41867263 - 41867146
Alignment:
Q  20 aaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaagcgt 119  Q
    |||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||| || || ||||||||||||||||||| ||||||||| ||    
T  41867263 aaagcattatcaaaatccgagtccatgccatataacccactgtctctcaaaatatgatcttataacacccaagactgtgccctagaagccacaaaagtgt 41867164  T
Q  120 acaaagaaacctctaatg 137  Q
    || | ||| |||||||||    
T  41867163 acgaggaagcctctaatg 41867146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 173
Target Start/End: Original strand, 28225794 - 28225936
Alignment:
Q  31 aaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaagcgtacaaagaaacc 130  Q
    ||||||| ||| ||| |||||||  ||| ||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||| ||| | ||| ||    
T  28225794 aaaatccaagtccataccacatatcccaatgtctctcaaaatatgatcttgtagcacccaagactgcgccctagaagccacaaaagcatacgaggaagcc 28225893  T
Q  131 tctaatgttgagtacaaacccaaccctccaaacctaataggta 173  Q
    ||||    |||||| |||||||  || ||| ||||||||||||    
T  28225894 tctacctctgagtataaacccaggcccccatacctaataggta 28225936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 19161183 - 19161082
Alignment:
Q  20 aaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaagcgt 119  Q
    |||||||||||||||||||| | |||  ||||||   || ||||||||||||||||||||||||||| ||||||||||| | ||||| ||||||||||||    
T  19161183 aaagcattatcaaaatccgaatccatatcacatatctcattgtctctcaaaatatgatcttgtagcacccaagactgtgtcatagaagccacaaaagcgt 19161084  T
Q  120 ac 121  Q
    ||    
T  19161083 ac 19161082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 173
Target Start/End: Original strand, 8588932 - 8588969
Alignment:
Q  136 tgttgagtacaaacccaaccctccaaacctaataggta 173  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8588932 tgttgagtacaaacccaaccctccaaacctaataggta 8588969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 32120675 - 32120831
Alignment:
Q  16 atccaaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||   |||| ||||||||||||||||||||| ||| |||||| ||||||||| || |||| |||    
T  32120675 atccaaagcattatcaaaatccgagttcatgccacatatcacactatctctcaaaatatgatcttgtggcacccaagaatgtgccctaaaagccac-aaa 32120773  T
Q  116 gcgtacaaagaaacctctaatgttgagtacaaacccaaccctccaaacctaataggta 173  Q
    || ||  | ||| |||||| || |||||||||||||||||||| ||||||||||||||    
T  32120774 gcatatgaggaagcctctactgctgagtacaaacccaaccctctaaacctaataggta 32120831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 10402476 - 10402632
Alignment:
Q  16 atccaaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaa 115  Q
    |||||||||||||||||||||||||| ||| |||||||  ||||| |||||||||||||||||||||||||  |||||||| | ||||||| ||||||||    
T  10402476 atccaaagcattatcaaaatccgagtccataccacatatcccactatctctcaaaatatgatcttgtagcattcaagactgcgtcctagaagccacaaaa 10402575  T
Q  116 gcgtacaaagaaacctctaatgttgagtacaaacccaaccctccaaacctaataggta 173  Q
    || ||| | ||| ||||| | | |||||||||||||| |||  |||||||||||||||    
T  10402576 gcatacgaggaagcctct-acgctgagtacaaacccagcccctcaaacctaataggta 10402632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 34305245 - 34305381
Alignment:
Q  16 atccaaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaa 115  Q
    ||||||||||||||||||||| |||| ||| |||||||  ||||||||||||||||||||||||||||| | ||||||||| ||||||||| ||||||||    
T  34305245 atccaaagcattatcaaaatctgagtccataccacatatcccactgtctctcaaaatatgatcttgtagtacccaagactgcgccctagaagccacaaaa 34305344  T
Q  116 gcgtacaaagaaacctctaatgttgagtacaaaccca 152  Q
    |||||| | ||| ||||||  | |||||| |||||||    
T  34305345 gcgtacgaggaagcctctaccgctgagtataaaccca 34305381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 32116382 - 32116479
Alignment:
Q  16 atccaaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaa 114  Q
    ||||||||||||||||||| |||||   || |||||||  ||| ||||||| | ||||||||||||||||| ||||||||||||||||||| |||||||    
T  32116382 atccaaagcattatcaaaaaccgagcg-ataccacatatcccaatgtctcttacaatatgatcttgtagcacccaagactgtgccctagaagccacaaa 32116479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 22986723 - 22986809
Alignment:
Q  70 aatatgatcttgtagcagccaagactgtgccctagaaaccacaaaagcgtacaaagaaacctctaatgttgagtacaaacccaaccc 156  Q
    ||||||||||||||||| |||| | ||  ||||| || ||| |||||||||  |  ||||||||||| | |||||||||||||||||    
T  22986723 aatatgatcttgtagcacccaatattggaccctataagccataaaagcgtatgagaaaacctctaatttcgagtacaaacccaaccc 22986809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 156
Target Start/End: Complemental strand, 23801671 - 23801585
Alignment:
Q  70 aatatgatcttgtagcagccaagactgtgccctagaaaccacaaaagcgtacaaagaaacctctaatgttgagtacaaacccaaccc 156  Q
    ||||||||||||||||| |||| | ||  ||||| || ||| |||||||||  |  ||||||||||| | |||||||||||||||||    
T  23801671 aatatgatcttgtagcacccaatattggaccctataagccataaaagcgtatgagaaaacctctaatttcgagtacaaacccaaccc 23801585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 434041 - 434198
Alignment:
Q  16 atccaaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaa 115  Q
    |||||||||||||||||||||| |||  || |||||||  |||||||||||||||||||||| |||||||| ||||||||| ||||||||| ||||||||    
T  434041 atccaaagcattatcaaaatccaagtcaataccacatatcccactgtctctcaaaatatgatattgtagcacccaagactgcgccctagaagccacaaaa 434140  T
Q  116 gcgtacaaagaaacctctaatgttgagtacaaacccaaccctccaaacctaataggta 173  Q
    |||| ||| ||| |||||| || |||||| |||||||||||  || ||||||||||||    
T  434141 gcgtgcaaggaagcctctactgctgagtataaacccaacccctcagacctaataggta 434198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 27337441 - 27337546
Alignment:
Q  16 atccaaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaa 115  Q
    |||||||||||||||||||||| ||| |||||||||||   |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  27337441 atccaaagcattatcaaaatccaagtccatgccacatatctcactgtctctcaaaatatgatcttgtagcacccaagactgcgccctagaaaccacaaaa 27337540  T
Q  116 gcgtac 121  Q
    ||||||    
T  27337541 gcgtac 27337546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 15291382 - 15291282
Alignment:
Q  16 atccaaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaa 115  Q
    ||||||| ||||||| |||||||||| ||| ||| |||   || ||||||||||||||||||||||||||| ||||||||||| |||| || ||| ||||    
T  15291382 atccaaaacattatcgaaatccgagtccataccatatatctcattgtctctcaaaatatgatcttgtagcatccaagactgtgtcctaaaagccataaaa 15291283  T
Q  116 g 116  Q
    |    
T  15291282 g 15291282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 29862549 - 29862705
Alignment:
Q  16 atccaaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaa 115  Q
    ||||||||||||||||||||||||||  || ||||| |  ||||||||||||||||||| ||||||||||| |||||||||  ||||| |||||||||||    
T  29862549 atccaaagcattatcaaaatccgagtctataccacacatcccactgtctctcaaaatat-atcttgtagcacccaagactgcaccctaaaaaccacaaaa 29862647  T
Q  116 gcgtacaaagaaacctctaatgttgagtacaaacccaaccctccaaacctaataggta 173  Q
     ||||| ||||| |||||| || ||||||||||||||| | |||||||||||||||||    
T  29862648 acgtacgaagaagcctctactgctgagtacaaacccaatcttccaaacctaataggta 29862705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 49018700 - 49018856
Alignment:
Q  16 atccaaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaa 115  Q
    |||||||||||||||||| || |||| ||| |||| ||   || |||||||||||||||||| |||||||| |||||||||||||||| || ||||| ||    
T  49018700 atccaaagcattatcaaattc-gagtccataccacgtatctcattgtctctcaaaatatgattttgtagcacccaagactgtgccctataagccacagaa 49018798  T
Q  116 gcgtacaaagaaacctctaatgttgagtacaaacccaaccctccaaacctaataggta 173  Q
    |||||  | ||| ||| || || |||| ||||||||||| |||||||||||| |||||    
T  49018799 gcgtaagaggaagcctatactgctgagcacaaacccaacgctccaaacctaacaggta 49018856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 52411261 - 52411174
Alignment:
Q  19 caaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaa 106  Q
    ||||||||||||||||||||||| ||| ||||||| |  | ||||||||||||||||||| ||||||| |||||| || |||||||||    
T  52411261 caaagcattatcaaaatccgagtccataccacatattagattgtctctcaaaatatgatcatgtagcatccaagattgcgccctagaa 52411174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 173
Target Start/End: Complemental strand, 6252524 - 6252442
Alignment:
Q  91 agactgtgccctagaaaccacaaaagcgtacaaagaaacctctaatgttgagtacaaacccaaccctccaaacctaataggta 173  Q
    |||||| ||||||||| |||||||||||||| | ||| |||||| |  |||||| ||||||||||| | | ||||||||||||    
T  6252524 agactgcgccctagaagccacaaaagcgtacgaggaagcctctactagtgagtataaacccaacccccgagacctaataggta 6252442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 156
Target Start/End: Complemental strand, 6174409 - 6174346
Alignment:
Q  93 actgtgccctagaaaccacaaaagcgtacaaagaaacctctaatgttgagtacaaacccaaccc 156  Q
    |||||||| ||||| |||||||||||||| | ||| |||||| || |||||| |||||||||||    
T  6174409 actgtgccttagaagccacaaaagcgtacgaggaagcctctactggtgagtataaacccaaccc 6174346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 37517837 - 37517938
Alignment:
Q  16 atccaaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagca-gccaagactgtgccctagaaaccacaaa 114  Q
    |||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||  ||||||  ||||||||||| |||||||    
T  37517837 atccaaagcattttcaaaatccgagtccatgccacataacccactgtctctcaaaatatgatcttgtagcaccccaagatcgtgccctagaagccacaaa 37517936  T
Q  115 ag 116  Q
    ||    
T  37517937 ag 37517938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 173
Target Start/End: Complemental strand, 25021161 - 25021002
Alignment:
Q  16 atccaaagcattatcaaaatccgagttcatgccaca--taatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaa 113  Q
    |||||||||||||||||||| ||| | ||| |||||  ||  ||||||||||||||||| |||| |||||||| |||| ||| ||  || ||| ||||||    
T  25021161 atccaaagcattatcaaaattcgactccataccacacgtatcccactgtctctcaaaatgtgatattgtagcacccaaaactatgttctggaagccacaa 25021062  T
Q  114 aagcgtacaaagaaacctctaatgttgagtacaaacccaaccctccaaacctaataggta 173  Q
     || |||  | ||| |  ||| ||||||||||||||||||| | ||||||||||||||||    
T  25021061 cagtgtatgacgaagcaactattgttgagtacaaacccaacgccccaaacctaataggta 25021002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 24125775 - 24125923
Alignment:
Q  16 atccaaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaa 115  Q
    |||||||||||| ||||||| ||||| ||| ||| |||  ||| |||||||||||||||||||||||||         ||| || |||||| ||| ||||    
T  24125775 atccaaagcattttcaaaattcgagtccataccatatatcccattgtctctcaaaatatgatcttgtag---------ctgcgctctagaagccataaaa 24125865  T
Q  116 gcgtacaaagaaacctctaatgttgagtacaaacccaaccctccaaacctaataggta 173  Q
    || ||  | ||||| |||| ||||||||| || |||| ||||||||||||||||||||    
T  24125866 gcataagaggaaacatctactgttgagtaaaatcccagccctccaaacctaataggta 24125923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 4700388 - 4700520
Alignment:
Q  16 atccaaagcattatcaaaatccgagttcatgccacataatccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaa 115  Q
    |||||||||||| |||||||| |||||||| |||| ||  ||||| ||||||||| |||||||||| |||  |||||| ||  |||| ||| ||||||||    
T  4700388 atccaaagcattgtcaaaatcagagttcataccacttatcccactatctctcaaagtatgatcttgaagcgcccaagattggaccctggaagccacaaaa 4700487  T
Q  116 gcgtacaaagaaacctctaatgttgagtacaaa 148  Q
    | |||| | ||| |||||| ||  |||||||||    
T  4700488 gtgtacgaggaagcctctattgccgagtacaaa 4700520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 10950518 - 10950454
Alignment:
Q  56 ccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaagcgta 120  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||  ||| |||||||||||||    
T  10950518 ccactgtctctcaaaatatgatcttgtagcacccaaggttgtgccccggaagccacaaaagcgta 10950454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 10958523 - 10958459
Alignment:
Q  56 ccactgtctctcaaaatatgatcttgtagcagccaagactgtgccctagaaaccacaaaagcgta 120  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||  ||| |||||||||||||    
T  10958523 ccactgtctctcaaaatatgatcttgtagcacccaaggttgtgccccggaagccacaaaagcgta 10958459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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