View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3434_high_6 (Length: 429)
Name: NF3434_high_6
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3434_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 17 - 418
Target Start/End: Original strand, 24949609 - 24950010
Alignment:
| Q |
17 |
aacaactaacctttcaacaatttgtaatcaatacttagcaaagaaaattataagttaatatacaatgagaatctaaacctaactattcatctagataacc |
116 |
Q |
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| T |
24949609 |
aacaactaacctttcaacaatttgtaatcaatacttagcaaagaaaattataagttaatatacaatgagaatctaaacctaactattcatctagataacc |
24949708 |
T |
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| Q |
117 |
ataagaaatggtttcatcagccttttaggcctgaatttgagcgatgtcaattactgcattaactaagaactaactaattacatgatacttcattattttg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24949709 |
ataagaaatggtttcatcagccttttaggcctgaatttgagcgatgtcaattactgcattaactaagaactaactaattacatgatacttcattactttg |
24949808 |
T |
|
| Q |
217 |
cataacctgcagtatattgaggagatagctataatgatatacagaatcagagtgaaaaatgaaatttaaaatcaaaagagaatggtaaatgagttttaag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24949809 |
cataacctgcagtatattgaggagatagctataatgatatacagaatcagagagaaaaatgaaatttaaaatcaaaagagaatggtaaatgagttttaag |
24949908 |
T |
|
| Q |
317 |
atctcatcattgagctagaccagaatgatcaaagccgagagctaagggcgaaatagcccgagacttgtaagtgttaaagtcattgtaagttgacttgtct |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24949909 |
atctcatcattgagctagaccagaatgatcaaagccgagagctatgggcgaaatagccagagacttgtaagtgttaaagtcattgtaagttgacttgtct |
24950008 |
T |
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| Q |
417 |
gt |
418 |
Q |
| |
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|| |
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| T |
24950009 |
gt |
24950010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 24366625 - 24366802
Alignment:
| Q |
20 |
aactaacctttcaacaatttgtaatcaatacttagcaaagaaaattataa-gttaatatacaatgagaatctaaacctaactattcatc---tagataac |
115 |
Q |
| |
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||||| |||||||||||||||||| || |||||| ||| |||||||||| | ||||||||| ||||| ||||||||||||||||||| |||||||| |
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| T |
24366625 |
aactaccctttcaacaatttgtaaccactacttaacaacaaaaattataagggtaatatacattgagatcctaaacctaactattcatctagtagataac |
24366724 |
T |
|
| Q |
116 |
cataagaaatggtttcatcagccttttaggcctgaatttgagcgatgtcaattactgcattaactaagaactaactaattacatgatac |
204 |
Q |
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|| ||||||||||||| |||||||||| ||||| |||| ||||||||||||||||| ||||| ||||||||||||||| |
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| T |
24366725 |
cacaagaaatggtttc-----------aggcctgaatatgagcagtgtcgattactgcattaactaataactacctaattacatgatac |
24366802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 381
Target Start/End: Complemental strand, 3000660 - 3000595
Alignment:
| Q |
314 |
aagatctcatcattgagctagaccagaatgatcaaagccgagagctaagggcgaaatagcccgagact |
381 |
Q |
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|||| |||||| |||||||||||| ||| ||| || ||||| |||||||||||||||||||||||| |
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| T |
3000660 |
aagagctcatcgttgagctagaccggaaagatgaacaccgag--ctaagggcgaaatagcccgagact |
3000595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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