View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3434_low_10 (Length: 420)
Name: NF3434_low_10
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3434_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 385475 - 385899
Alignment:
| Q |
1 |
actatataagagatgaaaatcctttccgatgatgaaacaataacaacttaagagaagatgaaggagtatttagccccaccaagccaaaatctcctccatg |
100 |
Q |
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||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
385475 |
actatatgagagatgaaaatcctttccgatcatcaaacaataacaacttaagagaagatgaaggagtatttagccccaccaaaccaaaatctcctccatg |
385574 |
T |
|
| Q |
101 |
acccaagtttgcaagcttatcaacacattgatt-------------------ttgatcttatacttttagtgaccatgatccataagatatagcatctat |
181 |
Q |
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| T |
385575 |
acccaagtttgcaagcttatcaacacattgattaactttccgataaacatgcttgatcttacacttttagtgaccatgatccataagatatatcatctat |
385674 |
T |
|
| Q |
182 |
tggagaagaggtaaaagatgatgattttgaaattgacgaaactccaccattcccaccattgggagaaagtccatctcaactataagaaaattgataccca |
281 |
Q |
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| T |
385675 |
tggagaagaggtaaaagatgatgattttgaaattgacgaaactccaccattcccaccatcaggagaaagtccatctcaactataagaaaattgataccca |
385774 |
T |
|
| Q |
282 |
agtcactcgtcaacctctaaccacaaacaagaccccaaagctcagtcataactgaagtaaaacgatcaagattacaagtgaagtcacgaataaaaccact |
381 |
Q |
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||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
385775 |
agttacccgtcaacctctaaccacaaacaagaccccaaagctcagtcataactgaagtaaaacgatcaagattacaagtgaagtcacgaataaaatcact |
385874 |
T |
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| Q |
382 |
catggagttccaaataaaacctatg |
406 |
Q |
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| T |
385875 |
tatggagttccaaataagacctatg |
385899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 181 - 403
Target Start/End: Complemental strand, 28559459 - 28559237
Alignment:
| Q |
181 |
ttggagaagaggtaaaagatgatgattttgaaattgacgaaactccaccattcccaccattgggagaaagtccatctcaactataagaaaattgataccc |
280 |
Q |
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| T |
28559459 |
ttggagaagaggtaaaagattttgattttgagattttcgagacttcaccattcccaccaccgtgagatagtccatctctactataaaaaaattgataccc |
28559360 |
T |
|
| Q |
281 |
aagtcactcgtcaacctctaaccacaaacaagaccccaaagctcagtcataactgaagtaaaacgatcaagattacaagtgaagtcacgaataaaaccac |
380 |
Q |
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| T |
28559359 |
aggttacatgccaacctcaaaccatgaacaagaccccaaagttcagccataaccgaagtaaatcgaccaaggttacacgtgaaaccaggtataaaacaac |
28559260 |
T |
|
| Q |
381 |
tcatggagttccaaataaaacct |
403 |
Q |
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|||| |||||| ||||| |||| |
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| T |
28559259 |
ccatgaagttcctaataagacct |
28559237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 28559619 - 28559537
Alignment:
| Q |
39 |
aataacaacttaagagaagatgaaggagtatttagccccaccaagccaaaatctcctccatgacccaagtttgcaagcttatca |
122 |
Q |
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||||||||||||||||| | || |||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28559619 |
aataacaacttaagagatcaagatggag-atttagctccaccaagccaaaatctcctccatgacctaagtttgcaagcttatca |
28559537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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