View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3434_low_11 (Length: 408)
Name: NF3434_low_11
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3434_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 8854625 - 8855024
Alignment:
| Q |
1 |
ggaagtgtggaaaggctcacacactgtggagaagaagttgatgattgaaaagaagccttgcaatcaaagtggttagatgaaaaggatatagtgagagaag |
100 |
Q |
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| T |
8854625 |
ggaagtgaggaaaggctcacacactgtggagaagaagttgatgattgaaaagaagccttgcaatcaaagtggttagatgaaaaggatatagtgagagaag |
8854724 |
T |
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| Q |
101 |
atgagattaaggccattgttaataattattgaacacttttcaaactaaaatatannnnnnnnncccagttaaaatatagcttaagttattaata------ |
194 |
Q |
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| T |
8854725 |
atgagattaaggccattgttaataattattgaacacttttcaaactaaaatatatttttttttcccagttaaaatatagcttaagttattaatatgtttc |
8854824 |
T |
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| Q |
195 |
---tgtttctaatgtattagtctcaattgtgctttgataatttgcaaatgaatgtggaaatcctgttcctacaaattgaagtgaagcagaaccactcnnn |
291 |
Q |
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| T |
8854825 |
ttttgtttctaatgtattagtctcaattgtgctttgataatttgcaaatgaatgtggaaatcctgttcctacaaattgaagtgaagcagaaccactcttt |
8854924 |
T |
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| Q |
292 |
nnnnnnnnnnatttcttttgcatctggataatgttatgatattattaattttttgatcaattgataatgggatgatatggataaaggatagggcttttat |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8854925 |
tttttttttc-tttcttttgcatctggataatgttatgatattattaattttttgatcaattgataatgggatgatatggataaaggatagggcttttat |
8855023 |
T |
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