View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3434_low_13 (Length: 385)
Name: NF3434_low_13
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3434_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 7 - 288
Target Start/End: Complemental strand, 38043328 - 38043047
Alignment:
| Q |
7 |
catgtttgaacctacaggtagctggaatgttgtctctgaaaattgaatttttaatttcaacatacctatatatttcgttttaaataattatagtcttttg |
106 |
Q |
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| T |
38043328 |
catgtttgaacctacaggtagctgaaatgttgtctctgaaaattgaatttttaatttcaacatacctatatatttcgttttaaataattgtagtcttttg |
38043229 |
T |
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| Q |
107 |
aagaaattccagtgacaactgctttgacatgaccataaggaggactacggctaaaaacattaacttgaccaaagtttgttctatgatttttcttcttctg |
206 |
Q |
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| T |
38043228 |
aagaaattccagtaacaactgctttgacatgaccataaggaggactacggctaaaaacattaacttgaccaaagtttgttctatgatttttcttcttctg |
38043129 |
T |
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| Q |
207 |
catatatgataattagccagtagaaccttcattaatgaaactgcggtaattcagcatgaaataacttcttatgtactactaa |
288 |
Q |
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| T |
38043128 |
catatatgataattagccagtagaaccttcattaatgaaactgcggtaattcagcatgaaataacttcttatgtactactaa |
38043047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 286 - 376
Target Start/End: Complemental strand, 38042872 - 38042782
Alignment:
| Q |
286 |
taaatttgataaacagatgtaaggaggcaagagatcacggtctagtttggatgagtttcttgctttaaagaattgagatgattatttaacc |
376 |
Q |
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| T |
38042872 |
taaatttgataaacagatgtaaggaggcaagagatcacggtctagtttggatgagtttcttgctttaaagaatcgagatgattatttaacc |
38042782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 40 - 250
Target Start/End: Original strand, 50905617 - 50905817
Alignment:
| Q |
40 |
ctctgaaaattgaatttttaatttcaacatacctatatatttcgttttaaataattatagtcttttgaagaaattccagtgacaactgctttgacatgac |
139 |
Q |
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| T |
50905617 |
ctctgataattgaatttttaatttcaacatctgtatatatttcgttttaaataattgcagtcttttgaagaaagtctaggaacaactgctttga------ |
50905710 |
T |
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| Q |
140 |
cataaggaggactacggctaaaaacattaacttg-accaaagtttgttctatgatttttcttcttctgcatatatgataattagccagtagaaccttcat |
238 |
Q |
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| T |
50905711 |
cataaggaggagtatagatcaaaacttgaacttgtaccaaagtttgttcgatga-----ctttttctgcatataagataattagccagtagaaccttgat |
50905805 |
T |
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| Q |
239 |
taatgaaactgc |
250 |
Q |
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| T |
50905806 |
tcatgaaactgc |
50905817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 297 - 372
Target Start/End: Original strand, 50906036 - 50906111
Alignment:
| Q |
297 |
aacagatgtaaggaggcaagagatcacggtctagtttggatgagtttcttgctttaaagaattgagatgattattt |
372 |
Q |
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||||||| ||||||||||||||||||| || |||||||| ||||||||| || ||||||||||||||||||||||| |
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| T |
50906036 |
aacagatataaggaggcaagagatcacagtttagtttgggtgagtttctagccttaaagaattgagatgattattt |
50906111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 286 - 377
Target Start/End: Complemental strand, 21634533 - 21634442
Alignment:
| Q |
286 |
taaatttgataaacagatgtaaggaggcaagagatcacggtctagtttggatgagtttcttgctttaaagaattgagatgattatttaacct |
377 |
Q |
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| T |
21634533 |
taaatttgataaacagatgtaaggaggcaagagatcacggtctagtttggatgagtttcttgctttaaagaattgagatgattatttaacct |
21634442 |
T |
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