View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3434_low_14 (Length: 373)
Name: NF3434_low_14
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3434_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 2 - 357
Target Start/End: Complemental strand, 52535253 - 52534898
Alignment:
| Q |
2 |
cgaacgaacatgttttgaaaaatgactgaattgaattaggtggttagataggcgcaccaggttcaccaaaatgttgtctaaccattgcagcaccaagaac |
101 |
Q |
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| T |
52535253 |
cgaacgaacatgttttgaaaaatgactgaattgaattaggtggttagataggcgcaccaggttcaccaaaacgttatctaaccattgcagcaccaagaac |
52535154 |
T |
|
| Q |
102 |
caaattctttcaaagaagtcacaactcataaacaaatgacctgcaatttcaatgttacctcaaccactgacacacatttgaacattatccttaataatat |
201 |
Q |
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| T |
52535153 |
cgaattctttcagagaagtcacaactcataaacaaatgacctgcaatttcaatgttacctcaaccactaacacacatttgaacattatccttaataatat |
52535054 |
T |
|
| Q |
202 |
ctcctatgaacaagttatctgcaacaggaattctattacaaagcaaccgctaagcaaacatagttactttaaaagggacaattttactcgataaaatgtg |
301 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52535053 |
ctcctacgaacaagttatctgcaataggaattctattacaaagcaaccgtcaagcaaacataattactttaaaagggacaattttactcgataaaatgtg |
52534954 |
T |
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| Q |
302 |
tgtaacatcagagtgactggtaactccacatataacaacaagcaataaacttatgt |
357 |
Q |
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|| |||||||||| ||||| |||||||||||||||||||||| |||||||||||| |
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| T |
52534953 |
tgcaacatcagagcgactgctaactccacatataacaacaagtgataaacttatgt |
52534898 |
T |
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