View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3434_low_20 (Length: 308)
Name: NF3434_low_20
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3434_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 36986438 - 36986737
Alignment:
| Q |
1 |
ggaatatcctgcaacatccaagtattagcatagagaccaagtacttcctgcaagccaaccaatataatcggaggaatacgcacactgtttttgaacattt |
100 |
Q |
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| T |
36986438 |
ggaatatcctgcaacatccaagtattagcatagagaccaagtacttcctgcaagccaaccaatataatcggaggaatactcacactgtttttgaacattt |
36986537 |
T |
|
| Q |
101 |
tcaacatatatttatggctattactcatgcatacaagggagaagataattcaatctgaagacatatactttagagtagggtggtatcattaagtttctta |
200 |
Q |
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| T |
36986538 |
tcaacatatatttatggctattactcatgcatacaagggagaagataattcaatctgaagacatatactttagagtagggtggtatcattaagtttctta |
36986637 |
T |
|
| Q |
201 |
ct--caggtagaaaataaaatatgttcttttcatttcctacaaatagcaaattttagaatttctgagccatttttggtcgctcacatttgtcaccctttg |
298 |
Q |
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| T |
36986638 |
ctcacaggtagaaaataaaatatgttcttttcatttcctacaaatagcaaactttagaatttctgagccatttttcgtcgctcacatttgtcaccctttg |
36986737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 36980745 - 36980913
Alignment:
| Q |
1 |
ggaatatcctgcaacatccaagtattagcatagagaccaagtacttcctgcaagccaaccaatataatcggaggaatacgcacactgtttttgaacattt |
100 |
Q |
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||||||||||||||||||||| ||| ||||||||||||||||||||| | ||||| | |||||||||| ||| |||| || |||| |||||||| |
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| T |
36980745 |
ggaatatcctgcaacatccaaatataagcatagagaccaagtacttcatacaagcaacccaatataattggaacaataaaca-----ttttcgaacattt |
36980839 |
T |
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| Q |
101 |
tcaacatatatttatgg---ctattactcatgcatac-aagggagaagataattcaatctgaagacatatactt |
170 |
Q |
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| T |
36980840 |
tcaacatatatctaaggttattattactcatgcatacaaagggagaaaataattcaatctgaagatctatactt |
36980913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 36984641 - 36984742
Alignment:
| Q |
4 |
atatcctgcaacatccaagtattagcatagagaccaagtacttcctgcaagccaacca-atataatcggaggaatacgcacactgtttttgaacattttc |
102 |
Q |
| |
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||||||||| || ||||| ||||||||||||||| || |||||| |||||||||||| ||||||| ||| |||||| || ||||||||||||||| |
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| T |
36984641 |
atatcctgccacctccaaatattagcatagagactaaatacttcatgcaagccaacccgatataattggaagaatacacat----tttttgaacattttc |
36984736 |
T |
|
| Q |
103 |
aacata |
108 |
Q |
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|||||| |
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| T |
36984737 |
aacata |
36984742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 36985284 - 36985330
Alignment:
| Q |
1 |
ggaatatcctgcaacatccaagtattagcatagagaccaagtacttc |
47 |
Q |
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||||||||||||||||||||| || |||||||||||| ||||||||| |
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| T |
36985284 |
ggaatatcctgcaacatccaaataatagcatagagactaagtacttc |
36985330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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