View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3434_low_21 (Length: 306)
Name: NF3434_low_21
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3434_low_21 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 5302031 - 5302319
Alignment:
| Q |
18 |
cttacataggtattaagctgtctgatgaaacttgagaagttattatggttaaagtatcgagacaacaaatctttttcaaaatcttctttattccaaacaa |
117 |
Q |
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| T |
5302031 |
cttacataggtattaagctgtctgatgaaacttgagaaattattatggttaaagtatcgagacaacaaatctttttcaaaatcttctttattccaaacaa |
5302130 |
T |
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| Q |
118 |
taaaacttttatcagtagcaccccaagaaacaatggcatctgttgaaggatcttcaaccatattataagtcttggtgagaaaaggaggcaccttatcgga |
217 |
Q |
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| T |
5302131 |
taaaacttttatcagtagcaccccaagaaacaatggcatccgttgaaggatcttcaaccatattataagtcttagtgagaaaaggaggcaccttatcgga |
5302230 |
T |
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| Q |
218 |
actactaccctgagcttcttccatcattcccaaaataaccctcaaactcaaaattacaattttcagtacacaatgacttctcaagactc |
306 |
Q |
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| T |
5302231 |
actactaccctgagcttcttccatcattcccaaaataactctcaaacccaaaattacaattttcaatacacaatgactcctcaagactc |
5302319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 279
Target Start/End: Original strand, 19100382 - 19100614
Alignment:
| Q |
44 |
gaaacttgagaagttattatggttaaagtatcgagacaacaaatctttttcaaaatcttctttattccaaacaataaaacttttatcagtagcaccccaa |
143 |
Q |
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| T |
19100382 |
gaaacttgagaagttattatgcttaaagtgtctaggtaacaaatcttttacaaaatcgaatggatttgaaacaatgaaacttctaccattagaactctag |
19100481 |
T |
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| Q |
144 |
gaaacaatggcatctgttgaaggatcttcaaccatattataagtcttggtgagaaaaggaggcaccttatcggaactactaccctgagcttcttccatca |
243 |
Q |
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| T |
19100482 |
gaaacaatggaattagttgaagaatcttcaaccatttcatatgtgtttttcaaaaaacgaggaatctgatcgga---actaccatgaccatcttccatga |
19100578 |
T |
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| Q |
244 |
ttcccaaaataaccctcaaactcaaaattacaattt |
279 |
Q |
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| T |
19100579 |
ttcccaaattaaccctcaaacccaaaactacaattt |
19100614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 281
Target Start/End: Complemental strand, 15620162 - 15619909
Alignment:
| Q |
28 |
tattaagctgtctgatgaaacttgagaagttattatggttaaagtatcgagacaacaaatctttttcaaaatcttctttattccaaacaataaaactttt |
127 |
Q |
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| T |
15620162 |
tattaagctgcctgatgaaatttgagaagttattttgcttaaagtatttaggcaacaaatcttcaccaaaatctactggattccaaacaatgaaacttct |
15620063 |
T |
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| Q |
128 |
atcagtagcaccccaagaaacaatggcatctgttgaaggatcttcaaccatattataagtcttggtgagaaaaggaggcaccttatcggaactactaccc |
227 |
Q |
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| T |
15620062 |
attggtggcactccaagaaacaatgacattagttaaaggataatcaactttgccataagtcttactaagaaaaggaggcacatgattgaaatgactacct |
15619963 |
T |
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| Q |
228 |
tgagcttcttccatcattcccaaaataaccctcaaactcaaaattacaattttc |
281 |
Q |
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| T |
15619962 |
tgagccacttccatcattttcaaaataaccctcaaacccaaatctacaattttc |
15619909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 293
Target Start/End: Complemental strand, 20681413 - 20681341
Alignment:
| Q |
221 |
actaccctgagcttcttccatcattcccaaaataaccctcaaactcaaaattacaattttcagtacacaatga |
293 |
Q |
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| T |
20681413 |
actaccatgaccatcttccatcattccaaaaataaccctcacacccaaaactaaaattttcaatacacaatga |
20681341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 20681596 - 20681554
Alignment:
| Q |
36 |
tgtctgatgaaacttgagaagttattatggttaaagtatcgag |
78 |
Q |
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| T |
20681596 |
tgtctgttgaaacttgagaagttattatgcttaaaatatcgag |
20681554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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