View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3434_low_25 (Length: 279)
Name: NF3434_low_25
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3434_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 15447687 - 15447419
Alignment:
| Q |
1 |
attgatactccatatgtgccaccacaatgcaccactttctctattactatcatttgtattcatatataatatagtaatatgtgagataaatgcttcttgc |
100 |
Q |
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| T |
15447687 |
attgatactccatatgtgccaccacaatgcaccactttctctattactatcatttgtattcatatataatatagtaatatgtgagataaatgcttcttgc |
15447588 |
T |
|
| Q |
101 |
aaccaaaaagacaaacaaatactcctctcttttacacatggactcattgatccattaggcatgttgcgaacatggtcaaacaaaaaagattgttgcaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15447587 |
aaccaaaaagacaaacaaatactcctctcttttacacatggactcattgatccattaggcatgttgcgaacatggtcaaacaaaaaagattgttgcaaat |
15447488 |
T |
|
| Q |
201 |
ggagaggagttcattgtaacatgaatggtagagtcacaaatatcagcctcccttgtttcactgatgatg |
269 |
Q |
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| T |
15447487 |
ggagaggagttcattgtaacatgaatggtagagtcacaaatatcagtctcccttgtttcactgatgatg |
15447419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 26 - 269
Target Start/End: Complemental strand, 15314821 - 15314578
Alignment:
| Q |
26 |
aatgcaccactttctctattactatcatttgtattcatatataatatagtaatatgtgagataaatgcttcttgcaaccaaaaagacaaacaaatactcc |
125 |
Q |
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||||||||| | ||||||||| | |||||| || | |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
15314821 |
aatgcaccattctctctattattttcatttataataatattaaatatagtaatatgtgagacaaatgcttcttgcaaccaaaaagacaaacaaatactcc |
15314722 |
T |
|
| Q |
126 |
tctcttttacacatggactcattgatccattaggcatgttgcgaacatggtcaaacaaaaaagattgttgcaaatggagaggagttcattgtaacatgaa |
225 |
Q |
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| T |
15314721 |
tttgttttaaacatggactcattgatccattaggcatgttgccaacatggtccaacaaagaagattgttgcaaatggagaggagttcattgtaacatgaa |
15314622 |
T |
|
| Q |
226 |
tggtagagtcacaaatatcagcctcccttgtttcactgatgatg |
269 |
Q |
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||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
15314621 |
tggcagagtcacaaatatcagcctcccttgtttcaccgatgatg |
15314578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 26 - 269
Target Start/End: Complemental strand, 15495190 - 15494947
Alignment:
| Q |
26 |
aatgcaccactttctctattactatcatttgtattcatatataatatagtaatatgtgagataaatgcttcttgcaaccaaaaagacaaacaaatactcc |
125 |
Q |
| |
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||||||||| | ||||||||| | |||||| || | |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
15495190 |
aatgcaccattctctctattattttcatttataataatattaaatatagtaatatgtgagacaaatgcttcttgcaaccaaaaagacaaacaaatactcc |
15495091 |
T |
|
| Q |
126 |
tctcttttacacatggactcattgatccattaggcatgttgcgaacatggtcaaacaaaaaagattgttgcaaatggagaggagttcattgtaacatgaa |
225 |
Q |
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| | ||||| |||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15495090 |
tttgttttaaacatggactcattgatccattaggcatgttgccaacatggtccaacaaagaagattgttgcaaatggagaggagttcattgtaacatgaa |
15494991 |
T |
|
| Q |
226 |
tggtagagtcacaaatatcagcctcccttgtttcactgatgatg |
269 |
Q |
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||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
15494990 |
tggcagagtcacaaatatcagcctcccttgtttcaccgatgatg |
15494947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 68 - 269
Target Start/End: Complemental strand, 15303905 - 15303704
Alignment:
| Q |
68 |
aatatagtaatatgtgagataaatgcttcttgcaaccaaaaagacaaacaaatactcctctcttttacacatggactcattgatccattaggcatgttgc |
167 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| ||||| ||||||| ||||||||||||||||||||||| |
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| T |
15303905 |
aatatagtaatatgtgagacaaatacttcttgcaaccaaaaagacaaacaaatacttctctgttttaaacatggaatcattgatccattaggcatgttgg |
15303806 |
T |
|
| Q |
168 |
gaacatggtcaaacaaaaaagattgttgcaaatggagaggagttcattgtaacatgaatggtagagtcacaaatatcagcctcccttgtttcactgatga |
267 |
Q |
| |
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||||||||| |||||| | |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||| ||||||||| |
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| T |
15303805 |
caacatggtccaacaaagaggattgttgtaaatggagaggagttcattgtaacataaatggcagagtcacaaatatcagtctcccttgttccactgatga |
15303706 |
T |
|
| Q |
268 |
tg |
269 |
Q |
| |
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|| |
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|
| T |
15303705 |
tg |
15303704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 68 - 269
Target Start/End: Complemental strand, 15484274 - 15484073
Alignment:
| Q |
68 |
aatatagtaatatgtgagataaatgcttcttgcaaccaaaaagacaaacaaatactcctctcttttacacatggactcattgatccattaggcatgttgc |
167 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||| ||||| ||||||| ||||||||||||||||||||||| |
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| T |
15484274 |
aatatagtaatatgtgagacaaatacttcttgcaaccaaaaagacaaacaaatacttctctgttttaaacatggaatcattgatccattaggcatgttgg |
15484175 |
T |
|
| Q |
168 |
gaacatggtcaaacaaaaaagattgttgcaaatggagaggagttcattgtaacatgaatggtagagtcacaaatatcagcctcccttgtttcactgatga |
267 |
Q |
| |
|
||||||||| |||||| | |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||| ||||||||| |
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| T |
15484174 |
caacatggtccaacaaagaggattgttgtaaatggagaggagttcattgtaacataaatggcagagtcacaaatatcagtctcccttgttccactgatga |
15484075 |
T |
|
| Q |
268 |
tg |
269 |
Q |
| |
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|| |
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| T |
15484074 |
tg |
15484073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 26 - 269
Target Start/End: Complemental strand, 15285432 - 15285189
Alignment:
| Q |
26 |
aatgcaccactttctctattactatcatttgtattcatatataatatagtaatatgtgagataaatgcttcttgcaaccaaaaagacaaacaaatactcc |
125 |
Q |
| |
|
|||||||| || ||||||||| | ||| || || |||||| |||||| |||||||| ||| |||||||||||||||| |||||||||||||||||||| |
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|
| T |
15285432 |
aatgcacccctctctctattattttcagttttaatcatattaaatataataatatgtcagacaaatgcttcttgcaacataaaagacaaacaaatactcc |
15285333 |
T |
|
| Q |
126 |
tctcttttacacatggactcattgatccattaggcatgttgcgaacatggtcaaacaaaaaagattgttgcaaatggagaggagttcattgtaacatgaa |
225 |
Q |
| |
|
|| ||||| ||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||| || || |
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|
| T |
15285332 |
tcagttttaaacatggactcactgattcattaggcatgttgtcaacatggtccaacaaaaaagattgttgcgaatggagaggagttcattgtaatatcaa |
15285233 |
T |
|
| Q |
226 |
tggtagagtcacaaatatcagcctcccttgtttcactgatgatg |
269 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15285232 |
tggcagagtcacaaatatcagcctcccttgttttactgatgatg |
15285189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 26 - 269
Target Start/End: Complemental strand, 15465801 - 15465558
Alignment:
| Q |
26 |
aatgcaccactttctctattactatcatttgtattcatatataatatagtaatatgtgagataaatgcttcttgcaaccaaaaagacaaacaaatactcc |
125 |
Q |
| |
|
|||||||| || ||||||||| | ||| || || |||||| |||||| |||||||| ||| |||||||||||||||| |||||||||||||||||||| |
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| T |
15465801 |
aatgcacccctctctctattattttcagttttaatcatattaaatataataatatgtcagacaaatgcttcttgcaacataaaagacaaacaaatactcc |
15465702 |
T |
|
| Q |
126 |
tctcttttacacatggactcattgatccattaggcatgttgcgaacatggtcaaacaaaaaagattgttgcaaatggagaggagttcattgtaacatgaa |
225 |
Q |
| |
|
|| ||||| ||||||||||| |||| |||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||| || || |
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| T |
15465701 |
tcagttttaaacatggactcactgattcattaggcatgttgtcaacatggtccaacaaaaaagattgttgcgaatggagaggagttcattgtaatatcaa |
15465602 |
T |
|
| Q |
226 |
tggtagagtcacaaatatcagcctcccttgtttcactgatgatg |
269 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
15465601 |
tggcagagtcacaaatatcagcctcccttgttttactgatgatg |
15465558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 88 - 267
Target Start/End: Complemental strand, 18064160 - 18063981
Alignment:
| Q |
88 |
aaatgcttcttgcaaccaaaaagacaaacaaatactcctctcttttacacatggactcattgatccattaggcatgttgcgaacatggtcaaacaaaaaa |
187 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| | ||||| ||||||||||| || |||||| ||||||| ||||||||| |||||| || |
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| T |
18064160 |
aaatgcttcttgcaaccaaaaggacaaacaaatactcctttgttttaaacatggactcaccgactcattagacatgttgtcaacatggtccaacaaagaa |
18064061 |
T |
|
| Q |
188 |
gattgttgcaaatggagaggagttcattgtaacatgaatggtagagtcacaaatatcagcctcccttgtttcactgatga |
267 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||| ||||||||||| |||||| ||| ||||||||||||| |||||| |
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| T |
18064060 |
gattgttgtgaatggagaggagttcaatgtaacatcaatggtagagtaacaaatctcaatctcccttgtttcattgatga |
18063981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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