View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3434_low_3 (Length: 593)
Name: NF3434_low_3
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3434_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Complemental strand, 35673795 - 35673219
Alignment:
| Q |
1 |
ccacctgaatccgacaacaacgaatatttttgacaccttatctgatactgcaatcccactataaacgggtaaaacccacccattgaaccgggtttatttc |
100 |
Q |
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| T |
35673795 |
ccacctgaatccgacaacaacgaatatttttgacaccttatctgatactgcaatcccactataaacgggtaaaacccacccattgaaccgggtttatttc |
35673696 |
T |
|
| Q |
101 |
ctggcaaacactcagaaacccacataatcgaactaaaccggttcgagtcatcaccaaccgggttctcaacccccaaaccattcatcaacacatcaataat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35673695 |
ctggcaaacactcagaaacccacataatcgaactaaaccggttcgagtcatcaccaaccgggttctcaacccccaaaccattcatcaacacatcaataat |
35673596 |
T |
|
| Q |
201 |
attcaaacctagtttctcaagtgcacatgcaaactcgctgagtgattctagttttatctggttcgactcggttgaacacaacgagtcgaactggaaccgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35673595 |
attcaaacctagtttctcaagtgcacatgcaaactcgctgagtgattctagttttatctggttcgactcggttgaacacaacgagtcgaactggaaccgg |
35673496 |
T |
|
| Q |
301 |
aacgactcaacgagtttttcttcgtcgttgtcgttgtcaccttcgtaaccgaaaggccagttttgagggaagaatgattctttttgatcatgtgaaaggt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35673495 |
aacgactcaacgagtttttcttcgtcgttgtcgttgtcaccttcgtaaccgaaaggccagttttgagggaagaatgattctttttgatcatgtgaaaggt |
35673396 |
T |
|
| Q |
401 |
tgaagagtttgagtgactctgactcagccaagttggcgagttttgaagaaactgagtgatcagtgaattgaataaaaccaagttgagaaatggaggagat |
500 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35673395 |
tgaagagtttgagtgactctgactcagccaagttggcaagttttgaagaaactgagtgatcagtgagttgaataaaaccaagttgagaaatggaggagat |
35673296 |
T |
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| Q |
501 |
gagtttttctggtgtgagtgatgaaaaggagagagaaggaggagaggtggtggttggagaggatcggcggatggtgg |
577 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35673295 |
gagtttttctggtgtgagtgatgaaaaggagagagaaggaggagaggtggtggttggagaggatcggcggatggtgg |
35673219 |
T |
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