View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3434_low_31 (Length: 253)
Name: NF3434_low_31
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3434_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 5329306 - 5329530
Alignment:
| Q |
11 |
cacagaagcagcactttatggtggcaactcagtgtattatgatggctccatgataaaagcagctgcaatttcaaacaatgagtatatggccatgatgaag |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5329306 |
cacagaagcagcactttatggtggcaactcagtgtattatgatggctccatgataaaagcagctgcaatttcaaacaatgagtatatggccatgatgaag |
5329405 |
T |
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| Q |
111 |
cgcatggctgaacttgaagagaaagtcactgttctcagtgttaagcctgtcatgcctccagaaaaagaggaaatgcttaataatgctctaaccagagtca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5329406 |
cgcatggctgaacttgaagagaaagtcactgttctcagtgttaagcctgtcatgcctccagaaaaagaggaaatgcttaataatgctctaaccagagtca |
5329505 |
T |
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| Q |
211 |
gtactcttgaactggagttgggtgc |
235 |
Q |
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|||||||||||| |||||||||||| |
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| T |
5329506 |
gtactcttgaacaggagttgggtgc |
5329530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 54775469 - 54775693
Alignment:
| Q |
11 |
cacagaagcagcactttatggtggcaactcagtgtattatgatggctccatgataaaagcagctgcaatttcaaacaatgagtatatggccatgatgaag |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775469 |
cacagaagcagcactttatggtggcaactcagtgtattatgatggctccatgataaaagcagctgcaatttcaaacaatgagtatatggccatgatgaag |
54775568 |
T |
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| Q |
111 |
cgcatggctgaacttgaagagaaagtcactgttctcagtgttaagcctgtcatgcctccagaaaaagaggaaatgcttaataatgctctaaccagagtca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775569 |
cgcatggctgaacttgaagagaaagtcactgttctcagtgttaagcctgtcatgcctccagaaaaagaggaaatgcttaataatgctctaaccagagtca |
54775668 |
T |
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| Q |
211 |
gtactcttgaactggagttgggtgc |
235 |
Q |
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|||||||||||| |||||||||||| |
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| T |
54775669 |
gtactcttgaacaggagttgggtgc |
54775693 |
T |
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