View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3434_low_33 (Length: 249)

Name: NF3434_low_33
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3434_low_33
NF3434_low_33
[»] chr4 (2 HSPs)
chr4 (151-242)||(56230468-56230559)
chr4 (2-81)||(56230637-56230720)
[»] chr7 (1 HSPs)
chr7 (162-242)||(39188286-39188366)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 151 - 242
Target Start/End: Complemental strand, 56230559 - 56230468
Alignment:
Q  151 taaaagagtggacctgttgcaacggaagcctgtgtgatcactctgacaagttcctttccaccttgagggaatgggccctatcccttcatctc 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56230559 taaaagagtggacctgttgcaacggaagcctgtgtgatcactctgacaagttcctttccaccttgagggaatgggccctatcccttcatctc 56230468  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 56230720 - 56230637
Alignment:
Q  2 tagagatatatagtaaacacaagcaatactataattagcgatagtaaagaatgtgtaacc----gatcagaacacatagcatac 81  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||    
T  56230720 tagagacatatagtaaacacaagcaatactataattagcgatagtaaagaatgtgtaactaactgatcagaacacatagcatac 56230637  T

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Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 39188366 - 39188286
Alignment:
Q  162 acctgttgcaacggaagcctgtgtgatcactctgacaagttcctttccaccttgagggaatgggccctatcccttcatctc 242  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39188366 acctgttgcaacggaagcctgtgtgatcattctgacaagttcctttccaccttgagggaatgggccctatcccttcatctc 39188286  T

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