View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3434_low_39 (Length: 237)
Name: NF3434_low_39
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3434_low_39 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 56230797 - 56231018
Alignment:
| Q |
1 |
tcaaatgttttggttaaaccttttaatgtatatttcatgcaggaagcttataggagcaagatacttcaataaaggttatgctgcctatgctgcagggtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56230797 |
tcaaatgttttggttaaaccttttaatgtatatttcatgcaggaagcttataggagcaagatacttcaataaaggttatgctgcctatgctgcagggtca |
56230896 |
T |
|
| Q |
101 |
atggtactacagaacggcacacttgatactgcacgagacaatgaaggtcatggatctcacacactatcaacaataggaggaaactttgtttctggagtta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56230897 |
atggtactacagaacggcacacttgatactgcacgagacaatgaaggtcatggatctcacacactatcaacaataggaggaaactttgtttctggagtta |
56230996 |
T |
|
| Q |
201 |
atgtttttggcttaggaaatgg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
56230997 |
atgtttttggcttaggaaatgg |
56231018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 39188526 - 39188738
Alignment:
| Q |
1 |
tcaaatgttttggttaaaccttttaatgtatatttcatgcaggaagcttataggagcaagatacttcaataaaggttatgctgcctatgctgcagggtca |
100 |
Q |
| |
|
||||||||| || || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
39188526 |
tcaaatgttatgatttaaccttttaatatatatttcatgcaggaagcttataggagcaagatacttcaataaaggttatgctaccta---tgcagggtca |
39188622 |
T |
|
| Q |
101 |
atggtactacagaacggcacacttgatactgcacgagacaatgaaggtcatggatctcacacactatcaacaataggaggaaactttgtttctggagtta |
200 |
Q |
| |
|
||| |||| |||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||||||| ||||||||||| |||| || |
|
|
| T |
39188623 |
gaggtggtacaaaacggcacacttgatactccacgagataataaaggtcatggatctcacacactatcaacattaggagggaactttgtttccggagcta |
39188722 |
T |
|
| Q |
201 |
atgtttttggcttagg |
216 |
Q |
| |
|
|| || |||||||||| |
|
|
| T |
39188723 |
attttgttggcttagg |
39188738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University