View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3434_low_4 (Length: 496)
Name: NF3434_low_4
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3434_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 6e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 126 - 263
Target Start/End: Original strand, 39419767 - 39419904
Alignment:
| Q |
126 |
tccaagacattctctggttagaagggagcttccctgatctttggccttcaaagaagagaatggatttggtgagagcatctctgtagttgtgagtggcgaa |
225 |
Q |
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| T |
39419767 |
tccaagacattctctggttagaagggagcttccctgatctttggccttcaaagaagagaatggatttggtgagagcatctctgtagttgtgagtggcgaa |
39419866 |
T |
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| Q |
226 |
gtgagggtggtggcgatggagtgggaaggcatgggtat |
263 |
Q |
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| T |
39419867 |
gtgagggtggtggcgatggagtgggaaggcatgggtat |
39419904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 366 - 480
Target Start/End: Original strand, 39420007 - 39420121
Alignment:
| Q |
366 |
aaccaaagagcaaagtggtacctgcaatgcaagacagagtgtgctctgtttaatgcttggaacgaactctgctatttataaaagaaaaagctgcctttgt |
465 |
Q |
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| T |
39420007 |
aaccaaagagcaaagtggtacctgcaatgcaagacagagtgtgctctgtttaatgcttggaacgaactctgctatatataaaagaaaaagctgcctttgt |
39420106 |
T |
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| Q |
466 |
gatgtcctgctttgt |
480 |
Q |
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| T |
39420107 |
gatgtcctgctttgt |
39420121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 39419642 - 39419722
Alignment:
| Q |
1 |
acattgtacatttaagccaaaaataggcaacaaaaactatagaaatatataataatgtgagatttatgatatgatttgttt |
81 |
Q |
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| T |
39419642 |
acattgtacatttaagccaaaaataagcaacaaaaactatagaaatatataataatgtgagatttatgatatgatttgttt |
39419722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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