View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3434_low_40 (Length: 237)

Name: NF3434_low_40
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3434_low_40
NF3434_low_40
[»] chr5 (14 HSPs)
chr5 (1-223)||(41369945-41370167)
chr5 (1-223)||(41325171-41325393)
chr5 (4-223)||(41317110-41317329)
chr5 (4-222)||(41333084-41333302)
chr5 (2-217)||(31177513-31177728)
chr5 (1-200)||(41287273-41287472)
chr5 (1-162)||(41311312-41311473)
chr5 (1-208)||(31187585-31187792)
chr5 (1-217)||(41367260-41367476)
chr5 (1-208)||(31225986-31226193)
chr5 (4-122)||(41329151-41329269)
chr5 (5-153)||(41337892-41338040)
chr5 (1-114)||(41305419-41305532)
chr5 (83-132)||(41329543-41329592)
[»] chr4 (1 HSPs)
chr4 (1-163)||(17248447-17248609)
[»] chr3 (1 HSPs)
chr3 (92-148)||(22941642-22941698)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 41369945 - 41370167
Alignment:
Q  1 atacataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgat 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41369945 atacataccatttgatgcagggaggaggatgtgtccaggcattatgtttggcttacctaacgttgagttgcctcttgctagtttactttaccactttgat 41370044  T
Q  101 tggaagctttccaatgaaatgaagaatgaagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctatta 200  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  41370045 tggaagcttcccaatgaaatgaagaatgaagaattggatatgactgaatcatttgggattacagcagtaagaaaatatgatttatgcttgattcctatta 41370144  T
Q  201 ttcgtcgtatttgatatgtattg 223  Q
    |||||||||||||||||||||||    
T  41370145 ttcgtcgtatttgatatgtattg 41370167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 41325171 - 41325393
Alignment:
Q  1 atacataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgat 100  Q
    |||||||||||||||||| || || ||||||||||| || |||   |||| | |||| |||||||| |||||||||||||||||||||||||||||||||    
T  41325171 atacataccatttggtgctggaagaaggatgtgtcccggaattgcatttgccttacccaacgttgaattgcctcttgctagtttactttaccactttgat 41325270  T
Q  101 tggaagctttccaatgaaatgaagaatgaagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctatta 200  Q
    ||||||||| ||||| ||||||||||||||||  | |||||||| || ||||| |||||||| ||||  |||||  |   | ||||||| ||||||||||    
T  41325271 tggaagcttcccaataaaatgaagaatgaagaactagatatgaccgagtcatttgggattactgcaggtagaaagcacaatctatgcttaattcctatta 41325370  T
Q  201 ttcgtcgtatttgatatgtattg 223  Q
     ||||||| ||| ||||||||||    
T  41325371 ctcgtcgtctttaatatgtattg 41325393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 41317110 - 41317329
Alignment:
Q  4 cataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgattgg 103  Q
    ||||||||||||||| || ||||||||||||||||| |||   |||| | | || || |||||| ||||||||||||  |||||||| ||||||||||||    
T  41317110 cataccatttggtgctggaaggaggatgtgtccaggtattgcatttgccttgcccaatgttgagctgcctcttgctaagttactttatcactttgattgg 41317209  T
Q  104 aagctttccaatgaaatgaagaatgaagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctattattc 203  Q
    |||||| |||||| ||||||||||||||| |||||||||||||| ||||| |||||||| ||||  |||||| | | | ||||||| ||||||||   ||    
T  41317210 aagcttcccaatggaatgaagaatgaagaattggatatgactgagtcatttgggattactgcaggtagaaaacacgatctatgcttaattcctatccctc 41317309  T
Q  204 gtcgtatttgatatgtattg 223  Q
    ||||| ||| ||||||||||    
T  41317310 gtcgtttttaatatgtattg 41317329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 41333084 - 41333302
Alignment:
Q  4 cataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgattgg 103  Q
    ||||||||||||||| || |||||||||||||| || |||   |||| |||||| ||| ||||| | |||||||||   ||||||| |||||||||||||    
T  41333084 cataccatttggtgctggaaggaggatgtgtcccggaattgcatttgccctaccaaacattgagctacctcttgctcaattactttgccactttgattgg 41333183  T
Q  104 aagctttccaatgaaatgaagaatgaagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctattattc 203  Q
    |||||| ||||| ||||||||||||||||  | |||||||| || ||||| |||||||| | || ||||||  | | | |||| || |||||||||| ||    
T  41333184 aagcttcccaataaaatgaagaatgaagaactagatatgaccgagtcatttgggattactgtaggaagaaagcacgatctatgtttaattcctattactc 41333283  T
Q  204 gtcgtatttgatatgtatt 222  Q
    ||||| ||| |||||||||    
T  41333284 gtcgtctttaatatgtatt 41333302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 217
Target Start/End: Complemental strand, 31177728 - 31177513
Alignment:
Q  2 tacataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgatt 101  Q
    |||||||| || ||||| || || || ||||||||||||||    |||||| || | ||| ||||| |||||||||||   |||||||||||||||||||    
T  31177728 tacataccgttcggtgctggaagaagaatgtgtccaggcatggcatttggcttatccaacattgagctgcctcttgctcagttactttaccactttgatt 31177629  T
Q  102 ggaagctttccaatgaaatgaagaatgaagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctattat 201  Q
    |||||||| | |||| |||||||||||||||  | ||||||||||| ||||| ||| || | | |||||||||| |||   |||||||||||||||| |     
T  31177628 ggaagcttcctaatggaatgaagaatgaagaactagatatgactgagtcatttgggcttgctgtagtaagaaaacatgacctatgcttgattcctataac 31177529  T
Q  202 tcgtcgtatttgatat 217  Q
    ||||||| ||| ||||    
T  31177528 tcgtcgtctttaatat 31177513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 41287273 - 41287472
Alignment:
Q  1 atacataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgat 100  Q
    |||||||||||||||||| || ||||||||||| |||||||||   || ||| |||| ||||||||| | |||||||||   |||||||| |||||||||    
T  41287273 atacataccatttggtgctggaaggaggatgtgcccaggcattgccttcggcatacccaacgttgagcttcctcttgctgaattactttatcactttgat 41287372  T
Q  101 tggaagctttccaatgaaatgaagaatgaagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctatta 200  Q
    |||||||||  ||||| |||||||  ||||||  | ||||||||||| ||||| |||||||| | || ||||||| |||   |||| || ||||||||||    
T  41287373 tggaagcttctcaatggaatgaagtgtgaagaacttgatatgactgagtcatttgggattactgtaggaagaaaacatgacctatgattaattcctatta 41287472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 41311312 - 41311473
Alignment:
Q  1 atacataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgat 100  Q
    |||||||||||||||||| || |||||||||||||| || |||   |||| |||||| ||| ||||| | |||||||||   ||||||||||  ||||||    
T  41311312 atacataccatttggtgctggaaggaggatgtgtcccggaattgcatttgccctaccaaacattgagctacctcttgctcaattactttaccggtttgat 41311411  T
Q  101 tggaagctttccaatgaaatgaagaatgaagagttggatatgactgaatcattagggattac 162  Q
    ||||||||| ||||| ||||||||||||||||  | |||||| |||| ||||| ||||||||    
T  41311412 tggaagcttcccaataaaatgaagaatgaagaactagatatggctgagtcatttgggattac 41311473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 31187792 - 31187585
Alignment:
Q  1 atacataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgat 100  Q
    ||||||||| || ||||| || || || ||||||||||||||    |||||| || | ||| ||||| |||||||||||   ||||||||||||||||||    
T  31187792 atacataccgttcggtgctggaagaagaatgtgtccaggcatggcatttggcttatccaacattgagctgcctcttgctcagttactttaccactttgat 31187693  T
Q  101 tggaagctttccaatgaaatgaagaatgaagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctatta 200  Q
    ||||||||| | |||| |||||||||||||||  | ||||||||||| ||||| |||||  |   || ||||||| |||   ||||||||||||||||||    
T  31187692 tggaagcttcctaatggaatgaagaatgaagaactagatatgactgagtcatttgggatggctataggaagaaaacatgacctatgcttgattcctatta 31187593  T
Q  201 ttcgtcgt 208  Q
     |||||||    
T  31187592 ctcgtcgt 31187585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 41367260 - 41367476
Alignment:
Q  1 atacataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgat 100  Q
    |||||||||||||||||| || |||||||||||||  || |||   |||| | |||| ||| | ||| | ||| | |||   ||||||||||| ||||||    
T  41367260 atacataccatttggtgctggaaggaggatgtgtctgggtattgcatttgccttacccaacatagagctacctttagctcagttactttaccattttgat 41367359  T
Q  101 tggaagctttccaatgaaatgaagaatgaagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctatta 200  Q
    ||||||||| | |||| ||||||||||||||| || |||||||| || ||||| ||| || ||| || ||||||| |||  ||||||||||||||| | |    
T  41367360 tggaagcttccaaatggaatgaagaatgaagaattagatatgacggagtcatttgggcttgcagtaggaagaaaacatgacttatgcttgattcctttca 41367459  T
Q  201 ttcgtcgtatttgatat 217  Q
    ||||||||  |||||||    
T  41367460 ttcgtcgtccttgatat 41367476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 31225986 - 31226193
Alignment:
Q  1 atacataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgat 100  Q
    ||||||||| || ||||| || || || ||||||||||||||    |||||| || | ||| ||||| |||||||||||   ||||||||||||||||||    
T  31225986 atacataccgttcggtgctggaagaagaatgtgtccaggcatggcatttggcttatccaacattgagctgcctcttgctcagttactttaccactttgat 31226085  T
Q  101 tggaagctttccaatgaaatgaagaatgaagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctatta 200  Q
    ||||||||| | |||| |||||||||||||||  | ||||||||||| ||||| ||| || | | || ||||||| |||   | |||||||||||||| |    
T  31226086 tggaagcttcctaatggaatgaagaatgaagaactagatatgactgagtcatttgggctttctgtaggaagaaaaaatgacctgtgcttgattcctatca 31226185  T
Q  201 ttcgtcgt 208  Q
     |||||||    
T  31226186 ctcgtcgt 31226193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 41329151 - 41329269
Alignment:
Q  4 cataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgattgg 103  Q
    ||||||||||||||| || || |||||||||||||| |||   |||| | |||| || |||||| ||||||||||||  |||||||| ||||||||||||    
T  41329151 cataccatttggtgctggaagaaggatgtgtccaggtatttcatttgccatacccaatgttgagctgcctcttgctaagttactttatcactttgattgg 41329250  T
Q  104 aagctttccaatgaaatga 122  Q
    |||||| |||||| |||||    
T  41329251 aagcttcccaatggaatga 41329269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 153
Target Start/End: Original strand, 41337892 - 41338040
Alignment:
Q  5 ataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgattgga 104  Q
    |||||||||||||| || || |||||||||||||| |||   |||| | | || || |||||| ||||||||||||  || ||||| |||||||||||||    
T  41337892 ataccatttggtgctggaagaaggatgtgtccaggtattgcatttgccttgcccaatgttgagctgcctcttgctaagttgctttatcactttgattgga 41337991  T
Q  105 agctttccaatgaaatgaagaatgaagagttggatatgactgaatcatt 153  Q
    | ||| | |||| |||||   || ||||  | |||||||||||||||||    
T  41337992 aacttccaaatggaatgagccatcaagaacttgatatgactgaatcatt 41338040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 41305419 - 41305532
Alignment:
Q  1 atacataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgat 100  Q
    |||||||||||||||||| || |||||||||||||| ||||||   |||| | || | || |||||  | |||||||||   ||||||||  ||||||||    
T  41305419 atacataccatttggtgctggaaggaggatgtgtccgggcattgcatttgccttatcaaatgttgaacttcctcttgctgaattactttataactttgat 41305518  T
Q  101 tggaagctttccaa 114  Q
    ||||||||| ||||    
T  41305519 tggaagcttcccaa 41305532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 41329543 - 41329592
Alignment:
Q  83 ttactttaccactttgattggaagctttccaatgaaatgaagaatgaaga 132  Q
    ||||||||  |||||||||| ||||||||||||| |||||| ||||||||    
T  41329543 ttactttatgactttgattgaaagctttccaatggaatgaataatgaaga 41329592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 17248609 - 17248447
Alignment:
Q  1 atacataccatttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgat 100  Q
    |||||||||||||||||| || |||||||| ||||| ||||||   |||||| |||| ||| |||||||||||||||||   ||||||||||| ||||||    
T  17248609 atacataccatttggtgctggaaggaggatttgtccgggcattgcatttggcatacccaacattgagttgcctcttgctcaattactttaccattttgat 17248510  T
Q  101 tggaagctttccaatgaaatgaagaatgaagagttggatatgactgaatcattagggattaca 163  Q
    ||||||||| ||||||||||||||||||||||  | |||||||| || ||||| |||||||||    
T  17248509 tggaagcttcccaatgaaatgaagaatgaagatctagatatgaccgagtcatttgggattaca 17248447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 22941642 - 22941698
Alignment:
Q  92 cactttgattggaagctttccaatgaaatgaagaatgaagagttggatatgactgaa 148  Q
    |||||||||||||| ||| ||||||| ||||| |||||||| ||||| |||| ||||    
T  22941642 cactttgattggaaacttcccaatgagatgaaaaatgaagatttggacatgagtgaa 22941698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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