View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3434_low_41 (Length: 237)
Name: NF3434_low_41
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3434_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 29891856 - 29891641
Alignment:
| Q |
8 |
gatatcccaaggacaaaagtaatagttcttacatatcgagacatgccctcaaggatatcccatcacatggacccctcattttataaaacagagtcaaatg |
107 |
Q |
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| T |
29891856 |
gatatcccaaggacaaaagtaatagttcttacatatcgagacataccctcaaggatatcccatcacatggacccctcattttataaaacagagtcaaatg |
29891757 |
T |
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| Q |
108 |
taaggaatagttttttnnnnnnnnnnnnnntgtgaaagagatgcaattttatcaattgagttggcattagcta-cccttttacaattgttttggaggggg |
206 |
Q |
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| T |
29891756 |
taagtaatagttttttaaaaataaaaaaaatgtgaaagagatacaattttatcaattgagttggcattagctaccccttttacaattgttttcgaggggg |
29891657 |
T |
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| Q |
207 |
tttaaactttatatct |
222 |
Q |
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||||||||| |||||| |
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| T |
29891656 |
tttaaacttcatatct |
29891641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 28 - 219
Target Start/End: Complemental strand, 29885846 - 29885663
Alignment:
| Q |
28 |
aatagttcttacatatcgagacatgccctcaaggatatcccatcacatggacccctcattttataaaacagagtcaaatgtaaggaatagttttttnnnn |
127 |
Q |
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| T |
29885846 |
aatagttct-acatattgagacatacccttaaggatatctaatcacatggaccc-tcattttataatatagagtccaatgtaagtaatagtttttt--aa |
29885751 |
T |
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| Q |
128 |
nnnnnnnnnntgtgaaagagatgcaattttatcaattgagttggcattagctacccttttacaattgttttggagggggtttaaactttata |
219 |
Q |
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| T |
29885750 |
aataaaaaattgtgaaagagatacatttttatcaattgaattgatattaattacccttttacaattgttt----gggggtttaaactttata |
29885663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 29888940 - 29888876
Alignment:
| Q |
59 |
aggatatcccatcacatggacccctcattttataaaacagagtcaaatgtaaggaatagtttttt |
123 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||| || | |||||| ||| ||||||| |
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| T |
29888940 |
aggatatcccatcacatggacccgtcattttataatacagactccattgtaagtaatcgtttttt |
29888876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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