View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3434_low_42 (Length: 236)
Name: NF3434_low_42
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3434_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 34349228 - 34349447
Alignment:
| Q |
1 |
tcaagtgtctataaaacccaaagtttccaaagaaaaatgctttgcagaatctcgagttgttggttgtgtggcaacaggcatgggctttcaaattactata |
100 |
Q |
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| T |
34349228 |
tcaagtgtctataaaacccaaagtttccaaagaaaaatgctttgcagaatctcgagttgttggttgtgtggcaacaggcatgggctttcaaattactata |
34349327 |
T |
|
| Q |
101 |
ctaaaataccaaaaatgaattattaaatagtagataagatcaacaacgaacatgttgcaatttggacatacgatgttgatggaattgactaacaaattag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
34349328 |
ctaaaataccaaaaatgaattattaaatagtagataagat---caaagaacatgttgcaatttggagatacgatgttgatggaattgactaacaaagtag |
34349424 |
T |
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| Q |
201 |
taacaaattgccatgaaatatgt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
34349425 |
taacaaattgccatgaaatatgt |
34349447 |
T |
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