View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3434_low_47 (Length: 218)
Name: NF3434_low_47
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3434_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 43568171 - 43568358
Alignment:
| Q |
19 |
gcaggctcctagcaatgctcc----ccatactggagcatttggttttataggcatttcaagaataaaattctccgcctcttccaactttcctgcccttcc |
114 |
Q |
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| T |
43568171 |
gcaggctcctagcaatgctccctccccatactggagcatttggttttataggcatttcaagaataaaattctccgcctcttccaactttcctgcccttcc |
43568270 |
T |
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| Q |
115 |
aagaagatcaaccatacatccataatgttccaatctcggctctaacctataatcccttttcatgctttcaaatattccttgacccttt |
202 |
Q |
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| T |
43568271 |
aagaagatcaaccatacatccataatgttccaatctcggctctaacctataatcccttttcatgctttcaaatatttcttgacccttt |
43568358 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 28405603 - 28405564
Alignment:
| Q |
107 |
gcccttccaagaagatcaaccatacatccataatgttcca |
146 |
Q |
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| T |
28405603 |
gcccttccaagaaggtcaaccatacaaccataatgttcca |
28405564 |
T |
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