View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3434_low_8 (Length: 428)
Name: NF3434_low_8
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3434_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 32251340 - 32250952
Alignment:
| Q |
18 |
tcttgaacacactttatatgtaagtttatagaagttgtgtaacttggactttcgaataaccctagacgttgatttttgaaaatctttttcgaaatagtag |
117 |
Q |
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| T |
32251340 |
tcttgaacacacttgatatgtaagtttatagaagttgtgtaacttggactttcgaataaccctagacgttgatttttgaaaatctttttcgaaatagtag |
32251241 |
T |
|
| Q |
118 |
tcttcgaacttttggcttgttctcaattttgaaacgagaggctacccctgcaatgagattaatcctgatacagttgcaaatagattaaaacaacaggaga |
217 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32251240 |
tcttcgaacttttggcttattctcaattttgaaacgagaggctacccctgctatgagattaatcctgatacagttgcaaatagattaatacaacaggaga |
32251141 |
T |
|
| Q |
218 |
agcagcaaactctacgcgtagaagctctgcaagattattagtaccaacagaaaagacacaaaaatgttgacatggaaattttggattatcatgtgttttt |
317 |
Q |
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|||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32251140 |
agcagcaaacactacacgtagaagctctgctagattattagtaccaacagaaaagacacaaaaatgtagacatggaaattttggattatcatgtgttttt |
32251041 |
T |
|
| Q |
318 |
aaaggtctttatgttagaaattgagtttttgaattttattttatacatctatgtacatccggtgagtccagtattttcaagtatgtttg |
406 |
Q |
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| T |
32251040 |
aaaggtctttatgttagaaattgagtttttgaattttattttatacatctatgtacatccggtgagtccagtattttcaagtatgtttg |
32250952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 265 - 414
Target Start/End: Complemental strand, 32245353 - 32245197
Alignment:
| Q |
265 |
cagaaaagacacaaaaatgttgacatggaaatttt-ggattatcatgtgtttttaaaggtctt--tatgttagaaattgagtttttgaattttattttat |
361 |
Q |
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|||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32245353 |
cagaaaggacacaaaaatgtagacatggaaatttttggattatcatgtgtttttaaaggtaaaggtatgttagaaattgagtttttgaattttattttat |
32245254 |
T |
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| Q |
362 |
acatctatgtacatccggtgagt----ccagtattttcaagtatgtttggttctgtg |
414 |
Q |
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||||||||||||||| ||||||| ||||||||||| || |||||||||| |||| |
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| T |
32245253 |
acatctatgtacatctggtgagtccacccagtattttctagcatgtttggttttgtg |
32245197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 32246242 - 32246137
Alignment:
| Q |
33 |
atatgtaagtttatagaagttgtgtaacttggactttcgaataaccctagacgttgatttttgaaaatctttttcgaaatagtagtcttcgaacttttgg |
132 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||| |
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| T |
32246242 |
atatgaaagtttatagaagttgtgtaacttggactttcgaataaccctagacgttgatttttgaaaatc---ttcgaaatagcagtcttcgaacttctgg |
32246146 |
T |
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| Q |
133 |
cttgttctc |
141 |
Q |
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||||||||| |
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| T |
32246145 |
cttgttctc |
32246137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 32245496 - 32245445
Alignment:
| Q |
170 |
atgagattaatcctgatacagttgcaaatagattaaaacaacaggagaagca |
221 |
Q |
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| T |
32245496 |
atgagtttagtcctgatacagttgcaaatagattaaaacaacaggagaagca |
32245445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 146 - 177
Target Start/End: Complemental strand, 32256472 - 32256441
Alignment:
| Q |
146 |
ttgaaacgagaggctacccctgcaatgagatt |
177 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
32256472 |
ttgaaacgagaggctacccctgcaatgagatt |
32256441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 177
Target Start/End: Complemental strand, 32246066 - 32246032
Alignment:
| Q |
143 |
attttgaaacgagaggctacccctgcaatgagatt |
177 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
32246066 |
attttcaaacgagaggctacccctgcaatgagatt |
32246032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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