View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3434_low_9 (Length: 428)
Name: NF3434_low_9
Description: NF3434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3434_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 25 - 417
Target Start/End: Original strand, 2853056 - 2853450
Alignment:
| Q |
25 |
gaagaacaaaatacgacatctttgagttgtatcatggagaacctgaatttctgtcaaacattaacacaa---atgatcgagtcagttttctcatacagtt |
121 |
Q |
| |
|
|||||||||||||||||| ||||||| |||| || ||||||| ||||||||||| | ||||||||||| || ||| |||||||| ||| |||||||| |
|
|
| T |
2853056 |
gaagaacaaaatacgacacctttgagctgtaacacagagaacccgaatttctgtcca-cattaacacaataaataatctagtcagttatcttatacagtt |
2853154 |
T |
|
| Q |
122 |
gtcaatttaattaatcatgttaaatgaagcgtccctataaaactagatgccagtgcgaaattgctttatatgatatgatagcatatcaaggtttaaatca |
221 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||||||||||| ||||||| ||| ||||||| ||| |||||||||||||| ||| | ||||||||| |
|
|
| T |
2853155 |
g-caatttaattgatcatgttaaatgaagcgtccctataaaactggatgccactgccaaattgcattacatgatatgatagcacatcgaaatttaaatca |
2853253 |
T |
|
| Q |
222 |
atataattaaaataaaagttataacccgcatcgttcatgaaaagtatcttcagttatttcacaagatatttgtgaaataactcatcaggttcccttttgc |
321 |
Q |
| |
|
||| || || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2853254 |
ataaaagtacaataaaagttataaccagcatcgttcatgaaaagtatcttcagttatttcacaagatatttgtgaaataactcatcaggttcccttttgc |
2853353 |
T |
|
| Q |
322 |
aaccagttttaccacctgatgagcctactcagtgttacaatgcattca-attaatgccagaaaatggtgtttttgaataatgaatttggtgtttcat |
417 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||| | | | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2853354 |
aaccagttttaccacctgatgagtctactcagtgttaaaatgcattcacactcaggccagaaaatggtgtttttgaataatgaatttggtgtttcat |
2853450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 242 - 417
Target Start/End: Original strand, 2835424 - 2835599
Alignment:
| Q |
242 |
ataacccgcatcgttcatgaaaagtatcttcagttatttcacaagatatttgtgaaataactcatcaggttcccttttgcaaccagttttaccacctgat |
341 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2835424 |
ataaccagcatcgttcatgaaaagtatcttcagttatttcacaagatatttgtgaaataactcatcaggttcccttttgcaaccagttttaccacctgat |
2835523 |
T |
|
| Q |
342 |
gagcctactcagtgttacaatgcattcaattaatgccagaaaatggtgtttttgaataatgaatttggtgtttcat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2835524 |
gagcctactcagtgttacaatgcattcaattaatgccagaaaatggtgtttttgaataatgaatttggtgtttcat |
2835599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 2835267 - 2835424
Alignment:
| Q |
16 |
agaaggaaagaagaacaaaatacgacatctttgagttgtatcatggagaacctgaatttctgtcaaacattaacacaaatgatcgagtcagttttctcat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2835267 |
agaaggaaagaagaacaaaatacgacatctttgagttgtatcatggagaacctgaatttctgtcaaacattaacacaaataatcgagtcagttttctcat |
2835366 |
T |
|
| Q |
116 |
acagttgtcaatttaattaatcatgttaaatgaagcgtccctataaaactagatgcca |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2835367 |
acagttgtcaatttaattaatcatgttaaatgaagcgtccctataaaactagatgcca |
2835424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University