View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3435_high_1 (Length: 690)
Name: NF3435_high_1
Description: NF3435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3435_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 149 - 389
Target Start/End: Complemental strand, 6714402 - 6714162
Alignment:
| Q |
149 |
aagggtgtgtgtaagcctaagaggtctggtggtcttgggttgaaagatgtaaggttttttaacatagttttgttggcaaagtggatgtggaatttactat |
248 |
Q |
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| T |
6714402 |
aagggtgtgtgtaagcctaagaggtctggtggtcttgggttgaaagatgtaaggctttttaacatagttttgttggcaaagtggatgtggaatttattat |
6714303 |
T |
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| Q |
249 |
caaaaggtgaatcgttgctgaagaaggtgttgatagtaaagtatatgaatctattttggtcaatcctgatgtgtctagttacaatgtattgtatcttgct |
348 |
Q |
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| T |
6714302 |
caaaaggtgaatcgttacggaagaaggtgttgatagcaaagtatatgaatctattttggtcaatcctgatgtgcctagttacaatgtattgtatcttgct |
6714203 |
T |
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| Q |
349 |
tccttgtggtcgtctctgacttaccctttggtgttctctga |
389 |
Q |
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| T |
6714202 |
tccttgtggtcgtctctgacttaccctttggtgttctctga |
6714162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 446 - 662
Target Start/End: Complemental strand, 6714153 - 6713925
Alignment:
| Q |
446 |
gtgaaagtggttgtttaatatcttggtataggttcttgctttgcggatcaattatctagggttttctagtttccaatcaaagagatgtggtctctgactt |
545 |
Q |
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| T |
6714153 |
gtgaaagtggttgtttaatatcttggtataggttcttgctttgcggatcaattatctagggttttctagtttccaatcaaagagatgtggtctctgactt |
6714054 |
T |
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| Q |
546 |
acgtaccctttgatgtaaggc------------nnnnnnnnnnatccaagaacaagatttaagggtggannnnnnnaacctcattagtagtgaaacccta |
633 |
Q |
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| T |
6714053 |
acgtaccctttgatgtaaggcttttttttttttttttttttttatccaagaacaagatttaagggtggatttttttaacctcattagtagttaaacccta |
6713954 |
T |
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| Q |
634 |
actcttatggaggataatgtgtcttgggt |
662 |
Q |
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| T |
6713953 |
actcttatggaggataatgtgtcttgggt |
6713925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 6714543 - 6714429
Alignment:
| Q |
18 |
tgtctttgtcaattatttctcagttcatagtcatgtaattg-nnnnnnnnngttnnnnnnntcaatctatcgacgtgagcttaactcattcgctatgaat |
116 |
Q |
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| T |
6714543 |
tgtctttgtcaattatttctcagttcatagtcatgtaattgttttttttttgttaaaaaaatcaatctatcgacgtgagcttagctcattcgatataaat |
6714444 |
T |
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| Q |
117 |
attgcatattattgt |
131 |
Q |
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| T |
6714443 |
attgcatattattgt |
6714429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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