View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3435_high_3 (Length: 501)
Name: NF3435_high_3
Description: NF3435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3435_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 17 - 489
Target Start/End: Original strand, 8229827 - 8230299
Alignment:
| Q |
17 |
acaacaactcccataattagagaaagatcaatatttggctccaccaccattgtgaaaacatcatctcctagatcaattccacaagttgacttctttctcc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8229827 |
acaacaactcccataattagagaaagatcaatatttggctccaccaccattgtgaaaacatcatttcctagatcaattccacaagttgacttctttctcc |
8229926 |
T |
|
| Q |
117 |
ttagctgctcatagaaaaaacataaattagtacatgtacttaagcatttatatatgtttatgttgtttaccaaactttgctgaaaaaatgttagaaatct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8229927 |
ttagctgctcatagaaaaaacataaattagtacatgtacttaagcatttatatatgtttatgttgtttaccaaactttgctgaaaaaatgttagaaatct |
8230026 |
T |
|
| Q |
217 |
taattacctctgcaactatcactccattcttgtccattattttgcaagctggcttgcaagtgctgctttctattttataattatatggttggtttttatc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8230027 |
taattacctctgcaactatcactccattcttgtccattattttgcaagctggcttgcaagtgctgctttctattttataattatatggttggtttttatc |
8230126 |
T |
|
| Q |
317 |
caatccaagttcaacttcataacttgaatcccatttagagatgctatatgttttaccaactcgaaagcatggtcctttctggtcgttccttctcgccgga |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8230127 |
caatccaagttcaacttcataacttgaatcccatttagagatgctatatgttttaccaactcgaaagcatggtcctttctggtcgttccttgtcgccgga |
8230226 |
T |
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| Q |
417 |
agcttgtaaccctcccaaaacctagacaacttatattgctgcacgcacaaacattcatacacatgttaatatt |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8230227 |
agcttgtaaccctcccaaaacctagacaacttatattgctgcacgcacaaacatacatacacatgttaatatt |
8230299 |
T |
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