View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3435_high_6 (Length: 250)
Name: NF3435_high_6
Description: NF3435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3435_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 10377834 - 10377592
Alignment:
| Q |
1 |
cactcactctatgagtaactctcatcggttactccgtttcataactctcaatagacattttattttagcactccaactgttgaattatcttaatcatcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10377834 |
cactcactctatgagtaactctcatcggttactccgtttcataactctcaatagacattttattttagcactccaactgttgaattatcttaatcatcat |
10377735 |
T |
|
| Q |
101 |
gtatgtaatgtctcattttcatgaaaggcctaagtggggcatgttattgtaatgat---tcttgtaaaaatatttgagaggagcaaaacggccgtcattg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10377734 |
gtatgtaatgtctcattttcatgaaaggcctaagtggggcatgttattgtaatgattcttcttgtaaaaatatttgagaggagcaaaacggccgtcattg |
10377635 |
T |
|
| Q |
198 |
ccacaggattagatttacttgggtattcagtctgtattttctt |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10377634 |
ccacaggattagatttacttgggtattcagtctgtattttctt |
10377592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 10441123 - 10441017
Alignment:
| Q |
31 |
actccgtttcataactctcaatagacattttattttagcactccaactgttgaattatcttaatcatcatgtatgtaatgtctcattttcatgaaaggcc |
130 |
Q |
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|||||||||||||||||| ||||||||||||||| |||| ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
10441123 |
actccgtttcataactctttatagacattttatttcagcaatccaattgttgaattatcgtaatcatcatgtatgtaatgtctcattttcaggaaaggcc |
10441024 |
T |
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| Q |
131 |
taagtgg |
137 |
Q |
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||||||| |
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| T |
10441023 |
taagtgg |
10441017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 10658566 - 10658624
Alignment:
| Q |
159 |
ttgtaaaaatatttgagaggagcaaaacggccgtcattgccacaggattagatttactt |
217 |
Q |
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|||||||||| |||||||||||||||| || |||| |||||||||||||||||||||| |
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| T |
10658566 |
ttgtaaaaatgtttgagaggagcaaaatggttgtcactgccacaggattagatttactt |
10658624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 10102421 - 10102468
Alignment:
| Q |
1 |
cactcactctatgagtaactctcatcggttactccgtttcataactct |
48 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||| |||| |
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| T |
10102421 |
cactcactctatgagtaactctcgtcggttaatccgtttcatagctct |
10102468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 10213344 - 10213391
Alignment:
| Q |
1 |
cactcactctatgagtaactctcatcggttactccgtttcataactct |
48 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||| |||| |
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| T |
10213344 |
cactcactctatgagtaactctcgtcggttaatccgtttcatagctct |
10213391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 10075392 - 10075439
Alignment:
| Q |
1 |
cactcactctatgagtaactctcatcggttactccgtttcataactct |
48 |
Q |
| |
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|||||||||||||||||| |||| || |||||||||||||||| |||| |
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| T |
10075392 |
cactcactctatgagtaaatctcgtcagttactccgtttcatagctct |
10075439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 10217306 - 10217356
Alignment:
| Q |
132 |
aagtggggcatgttattgtaatgattct---tgtaaaaatatttgagagga |
179 |
Q |
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|||||| ||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
10217306 |
aagtggagcatgttattgtaatgattcttcctgtaaaaatgtttgagagga |
10217356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 25793951 - 25794062
Alignment:
| Q |
132 |
aagtggggcatgttattgtaatgattct---tgtaaaaatatttgagaggagcaaaacggccgtcattgccacaggattagatttacttgggtattcagt |
228 |
Q |
| |
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|||| ||||||||||||||||||||||| ||||||||| ||||||||||||||| || || |||||||||||||| |||||||| | |||||||| |
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| T |
25793951 |
aagtagggcatgttattgtaatgattcttcttgtaaaaatgtttgagaggagcaaattggttgtaattgccacaggattggatttactaagttattcagt |
25794050 |
T |
|
| Q |
229 |
ctgtattttctt |
240 |
Q |
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||||||||||| |
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| T |
25794051 |
ttgtattttctt |
25794062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 179
Target Start/End: Original strand, 26796777 - 26796827
Alignment:
| Q |
132 |
aagtggggcatgttattgtaatgattct---tgtaaaaatatttgagagga |
179 |
Q |
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|||||| ||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
26796777 |
aagtggagcatgttattgtaatgattcttcctgtaaaaatgtttgagagga |
26796827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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