View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3435_low_2 (Length: 627)
Name: NF3435_low_2
Description: NF3435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3435_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 18 - 615
Target Start/End: Original strand, 8229702 - 8230299
Alignment:
| Q |
18 |
atctgggcgtagcaatacattttgtaaaccaaaatgacttccacaagattcaaatcattgttgttcactactctcttttttccaatatacttacttacat |
117 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8229702 |
atctgggcttagcaatacattttgtataccaaaatgacttccacaagattcaaatcattgttgttcactactctcttttttccaatatacttaattacat |
8229801 |
T |
|
| Q |
118 |
tttacttttaataagactataagctacaacaactcccataattagagaaagatcaatatttggctccaccaccattgtgaaaacatcatctcctagatca |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8229802 |
tttacttttaataagactataagctacaacaactcccataattagagaaagatcaatatttggctccaccaccattgtgaaaacatcatttcctagatca |
8229901 |
T |
|
| Q |
218 |
attccacaagttgacttctttctccttagctgctcatagaaaaaacataaattagtacatgtacttaagcatttatatatgtttatgttgtttaccaaac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8229902 |
attccacaagttgacttctttctccttagctgctcatagaaaaaacataaattagtacatgtacttaagcatttatatatgtttatgttgtttaccaaac |
8230001 |
T |
|
| Q |
318 |
tttgctgaaaaaatgttagaaatcttaattacctctgcaactatcactccattcttgtccattattttgcaagctggcttgcaagtgctgctttctattt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8230002 |
tttgctgaaaaaatgttagaaatcttaattacctctgcaactatcactccattcttgtccattattttgcaagctggcttgcaagtgctgctttctattt |
8230101 |
T |
|
| Q |
418 |
tataattatatggttggtttttatccaatccaagttcaacttcataacttgaatcccatttagagatgctatatgttttaccaactcgaaagcatggtcc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8230102 |
tataattatatggttggtttttatccaatccaagttcaacttcataacttgaatcccatttagagatgctatatgttttaccaactcgaaagcatggtcc |
8230201 |
T |
|
| Q |
518 |
tttctggtcgttccttctcgccggaagcttgtaaccctcccaaaacctagacaacttatattgctgcacgcacaaacattcatacacatgttaatatt |
615 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8230202 |
tttctggtcgttccttgtcgccggaagcttgtaaccctcccaaaacctagacaacttatattgctgcacgcacaaacatacatacacatgttaatatt |
8230299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University