View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3435_low_4 (Length: 418)
Name: NF3435_low_4
Description: NF3435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3435_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 53425554 - 53425793
Alignment:
| Q |
1 |
tttggtgattggatgagatggggtcgtagaggattaaacaggtttaatgcaaaatggtctatgtataattatcctgatccagtttctgtttgtagtcatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53425554 |
tttggtgattggatgagatggggtcgtagaggattaaacaggtttaatgcaaaatggtctatgtataattatcctgatccagtttctgtttgtagtcatg |
53425653 |
T |
|
| Q |
101 |
agcttgtgaatgatactattgcagttcatttgttgaagaatcaagagaagtggattaagacacttaannnnnnnaaccatactggtccattgaaggaatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
53425654 |
agcttgtgaatgatactattgcagttcatttgttgaagaatcaagagaagtggattaagacacttaatttttttaaccatactggtccattgaaggaatc |
53425753 |
T |
|
| Q |
201 |
caagatgtatcatatagcttagcttaattattaattagcc |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53425754 |
caagatgtatcatatagcttagcttaattattaattagcc |
53425793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 275 - 401
Target Start/End: Original strand, 53425828 - 53425955
Alignment:
| Q |
275 |
gatatatgatgaaataatatgacatcaaatttcatttgattgaggggggagaaa-gtgagagtttttatgtgtagagaaacatgagattttgtcgtgaaa |
373 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53425828 |
gatatatgatgaaataatatgatatcaaatttcatttgattgaggggggagaaaagtgagagtttttatgtgtagagaaacatgagattttgtcgtgaaa |
53425927 |
T |
|
| Q |
374 |
acaggggatttagttcaaataaggaaac |
401 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
53425928 |
acaggggatttagttcaaataaggaaac |
53425955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University