View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3436-Insertion-1 (Length: 1133)
Name: NF3436-Insertion-1
Description: NF3436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3436-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 636; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 217 - 1047
Target Start/End: Complemental strand, 1037939 - 1037104
Alignment:
| Q |
217 |
ttagagaaataatttgttacagtctgttttccataattgtcattttcttttgcgtgttcgacaagattcttcatcttgttcatcaattcatcacatattt |
316 |
Q |
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| T |
1037939 |
ttagagaaagaatttgttacagtctgttttccataattgtcattttcttttgcgtgttcaacaagattcttcatcttgttcatcaattcatcacatattt |
1037840 |
T |
|
| Q |
317 |
tcattgatttatttgctttgatctttccttattctgcaagattcttactcatgcaatttttcttatcaatagagccatgcacccctcattcaccataagt |
416 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1037839 |
tcattgatttatttgctttgatctt-ccttattctgcaagattctcactcatgcaatttttcttatcaatagagtcatgcacccctcattcaccataagt |
1037741 |
T |
|
| Q |
417 |
cacaattttagttgctatatgattcaattcacgatttatcaatttttaaggtgtctggttatttatgctatgcctccactctccaatcgcacagacccaa |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| |||||| |||| |
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| T |
1037740 |
cacaattttagttgctatatgattcaattcacgatttatctatttttaaggtgtctggttatttatgctatgtctccactctcagatcacacagaaccaa |
1037641 |
T |
|
| Q |
517 |
acattatcctaaagccaaaaagtctctattcttgagatataagtcaagttacaaaggcaatgttcttcttgatttaaactccagagaaatatttgttaca |
616 |
Q |
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| T |
1037640 |
acattatcctaaagccaaaaagtttctattcttgggatataagtcaagttacaaaggctatgttcttcttgatttaaactccagagaaatatttgttaca |
1037541 |
T |
|
| Q |
617 |
cgcaatgtcgcattccatgagcatgttttgccatactataaatcatatatgtgtgttacttctaattgggaactattttctatctcagaaact----cca |
712 |
Q |
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| T |
1037540 |
cgcaatgtcgcattccatgagcatgttttgccatactataaatcatatatgtgtgttacttctaatt-ggaactattttctatctcag-aactccagcca |
1037443 |
T |
|
| Q |
713 |
gttcacctattacacaccttactgttttagatgatctctcacatgaacctcagacacatatccatcagaaccctcgtgttgataatgcaccttgatgaca |
812 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
1037442 |
gttcacctattacacaccttactgttttagatgatctctcacatgaacctcagacacatatccatcagaacccttgtgttgataatgcaacttgatgaca |
1037343 |
T |
|
| Q |
813 |
tgaaattatataggggtttttagtgcctttttagggttaattagtagcaattttatgtgtattttagttgagttttgtaaaggattgttcaaaggtcatg |
912 |
Q |
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|||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||| |
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| T |
1037342 |
tgaaattatata-gggtttttagtgcctttttagggtt--taagtagcaattttatgtgtattttagttgagttttgtaaaggatcgatcaaaagtcatg |
1037246 |
T |
|
| Q |
913 |
caagagtataaatggg-aaataactttgaaactat--acatatacccaaactagac-acttcgtgattgtactatgcttattaca--gtttgacatgtta |
1006 |
Q |
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|||||||||||||||| |||||||||||||||||| | ||||||||||||||||| |||| |||| |||||||||||||||||| |||||||||||| |
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| T |
1037245 |
caagagtataaatgggaaaataactttgaaactataaaaatatacccaaactagacaactttgtgactgtactatgcttattacaagttttgacatgtta |
1037146 |
T |
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| Q |
1007 |
aa-tttggggcatagttattacagacgtttcagtgaagataa |
1047 |
Q |
| |
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| T |
1037145 |
aattttggggcatagttattatagacgtttcagtgaggataa |
1037104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 1038154 - 1037996
Alignment:
| Q |
8 |
aaaactgatgtagttagttagcttgtattcata----cttgttcagcaagtaattagcctaggcagttatagattagcattagcaacaacatacacatat |
103 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1038154 |
aaaactgatgtagttagttagcttgtatccatatatacttgttcagcaagtaattagcctaggcagttatagattagcattagtaacaacatacacatat |
1038055 |
T |
|
| Q |
104 |
agtaagataga--gtggagctattaaaagctacatgtatcttctatctcaagtaatgga |
160 |
Q |
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| T |
1038054 |
agtaagatagagtgtggagctattaaaaactacatgtatcttctatctcaagtaatgga |
1037996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 855 - 898
Target Start/End: Original strand, 49683421 - 49683464
Alignment:
| Q |
855 |
agtagcaattttatgtgtattttagttgagttttgtaaaggatt |
898 |
Q |
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| T |
49683421 |
agtagcaagtttatttgtattttagtagagttttgtaaaggatt |
49683464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 864 - 931
Target Start/End: Complemental strand, 34120611 - 34120543
Alignment:
| Q |
864 |
tttatgtgtattttagttgagttttgtaaag-gattgttcaaaggtcatgcaagagtataaatgggaaa |
931 |
Q |
| |
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||||||||| ||||||||||||||||||||| || ||||||| |||||| ||||| | |||||||||| |
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| T |
34120611 |
tttatgtgtgttttagttgagttttgtaaagaaatagttcaaaagtcatgaaagagaaaaaatgggaaa |
34120543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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