View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3436-Insertion-12 (Length: 679)
Name: NF3436-Insertion-12
Description: NF3436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3436-Insertion-12 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 181 - 679
Target Start/End: Complemental strand, 35094324 - 35093855
Alignment:
| Q |
181 |
actggcggcctttgagctgcttgaatgttagtaagagctggagttggctttgtctcttcaagtggttctagatcttcccacacacccttgtcgttttcag |
280 |
Q |
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| T |
35094324 |
actggcggcctttgagctgcttgaatgttagtaagagctggagttggctttgtctcttcaagtggttctagatcttcccacgcacccttgtcgttttcag |
35094225 |
T |
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| Q |
281 |
gctcctcgtcaattccattctctagttccccccagtcacccgtcgatgtagaagcatggtgctcactgaaatctggtgtggaatttacacagataggtgc |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35094224 |
gctcctcgtcaattccattctctagttccccccagtcatctgtcgatgtagaagcatggtgctcactgaaatctggtgtggaatttacacagataggtgc |
35094125 |
T |
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| Q |
381 |
tgttgaaggagtatctacaactagaaaaccc-nnnnnnngacaatataagcagtttagtaaaaatgtacccttgtaaggaaactgcctgaatctgcagaa |
479 |
Q |
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| T |
35094124 |
tgttgaaggagtatctacaactagaaaacccaaaaaagagacaatataagcagtttagtaaaaatgtacccatgtaaggaaactgcctgaatctgcagaa |
35094025 |
T |
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| Q |
480 |
caaattatgccatcattaacagatcagataaaggagtagagttaacatctttgcctcaagggtggtggataaggagatcagggatgagatcttcagttgt |
579 |
Q |
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| T |
35094024 |
caaattatgccatcattaacagatcagataaaggagtagagttaacatctttgcctcaagggtggtggataag------------gagatcttcagttgt |
35093937 |
T |
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| Q |
580 |
catttccctcagtttctcagttttctttcccttttcttcatttaataatttaacaatt-acataaaaccatgcccagatatagtgtttacttctaaatga |
678 |
Q |
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| T |
35093936 |
catttccctcagt-------------------tttcttcatttaataatttaacaattaacataaaaccatgcccagatatagtgtttacttctaaatga |
35093856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 35094462 - 35094289
Alignment:
| Q |
8 |
ggtataaacatatgcaacttccaatgtacgacattgaaaattattaacagtaactagcagacatggaaatatggaaatattgctaccaaaataacagttg |
107 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35094462 |
ggtataaacatatgcaacttccaatgtatgacattgaaaattattaacagtaactagcagacatggaaatgtggaaatattgctaccaaaataacagttg |
35094363 |
T |
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| Q |
108 |
aataatcaataccgattgtctctgaaacaggttgagaaactggcggcctttgagctgcttgaatgttagtaaga |
181 |
Q |
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| T |
35094362 |
aataatcaataccgattgtctgtgaaacaggttgagaaactggcggcctttgagctgcttgaatgttagtaaga |
35094289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 3e-65; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 181 - 406
Target Start/End: Complemental strand, 32586814 - 32586580
Alignment:
| Q |
181 |
actggcggcctttgagctgcttgaatgttagtaagagctggagttggctttgtctcttcaagtggttctagatcttcccacacacccttgtcgttttcag |
280 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||| |||||| || ||||||| ||||||| |
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| T |
32586814 |
actggccgcctttgagctgcttgaatgttagtaagagctggagtcggctttgtttcttcaagtggttctaaatcatcccacccatccttgtcattttcag |
32586715 |
T |
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| Q |
281 |
gctcctcgtcaattccattctctagttccccccagtcacccgtcgatgtagaa---------gcatggtgctcactgaaatctggtgtggaatttacaca |
371 |
Q |
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| T |
32586714 |
gttcctcgtcaattccattctctagctccccccagccatccgttgatgtaggagatgtaggggcatggtggtcagtgaaatctggtgtggaatttacacg |
32586615 |
T |
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| Q |
372 |
gataggtgctgttgaaggagtatctacaactagaa |
406 |
Q |
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| T |
32586614 |
gataggtgctgttgaaggagtgtctgcaactagaa |
32586580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 474 - 629
Target Start/End: Complemental strand, 32586517 - 32586357
Alignment:
| Q |
474 |
gcagaacaaattatgccatcattaacagatcagataaaggagtagagttaacatctttgcctcaagggtggtggataaggagatca-gggatgagatctt |
572 |
Q |
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||||||||||||||| || ||||||||| |||| || ||||||| | ||||| ||||||||||| || ||||||| |||||| | ||||| |||| || |
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| T |
32586517 |
gcagaacaaattatggcagtgttaacagataagatgaaagagtagaatcaacatatttgcctcaagagttgtggatagggagatgaggggataagatttt |
32586418 |
T |
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| Q |
573 |
cagttgtcatttccctcagtttctcagttttctttcc----cttttcttcatttaataatt |
629 |
Q |
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| T |
32586417 |
cagctgccacttccctcagtttctcagttttcttccctttacttttcttcatttaataatt |
32586357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 99 - 181
Target Start/End: Complemental strand, 32586861 - 32586779
Alignment:
| Q |
99 |
taacagttgaataatcaataccgattgtctctgaaacaggttgagaaactggcggcctttgagctgcttgaatgttagtaaga |
181 |
Q |
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||||||||||||||| |||||| |||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
32586861 |
taacagttgaataattaataccttttgtctgtgaaacaggttgaacaactggccgcctttgagctgcttgaatgttagtaaga |
32586779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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