View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3436-Insertion-14 (Length: 396)

Name: NF3436-Insertion-14
Description: NF3436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3436-Insertion-14
NF3436-Insertion-14
[»] chr4 (9 HSPs)
chr4 (8-396)||(3290097-3290485)
chr4 (10-227)||(3257041-3257249)
chr4 (10-246)||(3280175-3280402)
chr4 (109-267)||(3296130-3296289)
chr4 (199-295)||(3288208-3288304)
chr4 (10-56)||(3296044-3296090)
chr4 (10-58)||(3271429-3271477)
chr4 (11-60)||(3288037-3288086)
chr4 (10-58)||(3284940-3284988)


Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 8 - 396
Target Start/End: Original strand, 3290097 - 3290485
Alignment:
Q  8 cttagacagttgcaattttcaagttccatggtatatagagtagaggacatatatagtaagcactgtaaaatggtttaaggaatcaaggtgtttgctgtag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3290097 cttagacagttgcaattttcaagttccatggtatatagagtagaggacatatatagtaagcactgtaaaatggtttaaggaatcaaggtgtttgttgtag 3290196  T
Q  108 agcatgccctaaaaccaatactaatggctatttatatagtgatggcacgaaacccttttctttccccttttttcaacttcctcatcaccacctcaacaaa 207  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3290197 atcatgccctaaaaccaatactaatggctatttatatagtgatggcacgaaacccttttctttccccttttttcaatttcctcatcaccacctcaacaaa 3290296  T
Q  208 gcacatactttgagctagattggaccaacaaaaagaaaaggaacaagattggataatccatcaatattagaatttcctttttatgtcacgcaagccagtc 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3290297 gcacatactttgagctagattggaccaacaaaaagaaaaggaacaagattggataatccagcaatattagaatttcctttttatgtcacgcaagccagtc 3290396  T
Q  308 aaattggtacaacatgctttcaaaggtaatattacaaattccttttgatgtcagcaatttaagttggtatgattcgttttttccttaga 396  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3290397 aaattggtacaacatgctttcaaaggtaatattaaaaattccttttgatgtcagcaatttaagttggtatgatacgttttttccttaga 3290485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 3257041 - 3257249
Alignment:
Q  10 tagacagttgcaattttcaagttccatggtatatagagtagaggacatatatagtaagcactgtaaaatggtttaaggaatcaaggtgtttgctgtagag 109  Q
    ||||||||||||||| ||||| |||||||| ||| ||||||||||||||    | |||||   |||||||||||||||||||||||||||||    | ||    
T  3257041 tagacagttgcaattatcaaggtccatggtgtatggagtagaggacata----ggaagca---taaaatggtttaaggaatcaaggtgtttgg---aaag 3257130  T
Q  110 catgccctaaaaccaatact--aatggctatttatatagtgatggcacgaaacccttttctttccccttttttcaacttcctcatcaccacctcaacaaa 207  Q
    ||||| ||||||| || |||  |  |||||||||||||||||||||| ||| | |||||||||||| ||||||||  |||||||||||||||||| |||     
T  3257131 catgctctaaaactaagactggagaggctatttatatagtgatggcatgaaccacttttctttccc-ttttttcagtttcctcatcaccacctcagcaat 3257229  T
Q  208 gcacatactttgagctagat 227  Q
    ||| ||||||||||||||||    
T  3257230 gcatatactttgagctagat 3257249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 246
Target Start/End: Original strand, 3280175 - 3280402
Alignment:
Q  10 tagacagttgcaattttcaagttccatggtatatagagtagaggacatatatagtaagcactgtaaaatggtttaaggaatcaaggtgtttgctgtagag 109  Q
    ||||||||||||||| ||||| |||||||| ||||||||||||||    ||||| | |||   |||||||| ||||||||||||| ||||||    ||||    
T  3280175 tagacagttgcaattatcaaggtccatggtgtatagagtagagga----tataggaggca---taaaatggattaaggaatcaagttgtttgg---agag 3280264  T
Q  110 cat--gccctaaaaccaatactaatggctatttatatagtgatggcacgaaacccttttctttccccttttttcaacttcctcatcaccacctcaacaaa 207  Q
    |||  || ||||||| || ||| | |||||||||||||||||||||| ||| | | |||||||||||||||  ||  |||||||||||||||||| |||     
T  3280265 catatgctctaaaactaagactgaaggctatttatatagtgatggcatgaaccacctttctttccccttttc-cagtttcctcatcaccacctcagcaat 3280363  T
Q  208 gcacatactttgagctagattggaccaacaaaaagaaaa 246  Q
    ||| ||||||| |||||||| ||| ||| ||||||||||    
T  3280364 gcatatactttcagctagataggatcaagaaaaagaaaa 3280402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 109 - 267
Target Start/End: Original strand, 3296130 - 3296289
Alignment:
Q  109 gcatgccctaaaaccaatactaatggctatttatatagtgatggcacgaaacccttttctttccccttttttcaacttcctcatcaccacctcaacaaag 208  Q
    |||||| ||||||| || || || ||||||||||||||| ||||| |||| | |||  ||||||| |||||  || |||||||||||||||||| |||||    
T  3296130 gcatgcactaaaactaagaccaaaggctatttatatagttatggctcgaaccacttgcctttcccttttttcaaatttcctcatcaccacctcagcaaag 3296229  T
Q  209 cacatactttgagctagattggaccaacaaaaagaaaagg-aacaagattggataatcca 267  Q
    |||||||||||||||| ||  |||||| ||||  |||||| || ||||||||||||||||    
T  3296230 cacatactttgagctatatatgaccaagaaaataaaaaggaaaaaagattggataatcca 3296289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 295
Target Start/End: Original strand, 3288208 - 3288304
Alignment:
Q  199 ctcaacaaagcacatactttgagctagattggaccaacaaaaagaaaagg-aacaagattggataatccatcaatattagaatttcctttttatgtca 295  Q
    |||| ||||||||||||||||| ||| || |||||||  ||||||||||| |||||||||| |||||||| ||| |||| || |||||||| ||||||    
T  3288208 ctcagcaaagcacatactttgaactacataggaccaa-gaaaagaaaaggcaacaagattgaataatccaacaacattaaaaattccttttgatgtca 3288304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 3296044 - 3296090
Alignment:
Q  10 tagacagttgcaattttcaagttccatggtatatagagtagaggaca 56  Q
    ||||||||||||||||||||| |||||||| ||| ||||||||||||    
T  3296044 tagacagttgcaattttcaaggtccatggtgtatggagtagaggaca 3296090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 3271429 - 3271477
Alignment:
Q  10 tagacagttgcaattttcaagttccatggtatatagagtagaggacata 58  Q
    ||||||||||||||||||||| | |||||||||| |||||||| |||||    
T  3271429 tagacagttgcaattttcaaggttcatggtatatggagtagagcacata 3271477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 3288037 - 3288086
Alignment:
Q  11 agacagttgcaattttcaagttccatggtatatagagtagaggacatata 60  Q
    |||||||  ||||||||||  |||||||||||| ||||||||||||||||    
T  3288037 agacagtcacaattttcaaagtccatggtatatggagtagaggacatata 3288086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 3284940 - 3284988
Alignment:
Q  10 tagacagttgcaattttcaagttccatggtatatagagtagaggacata 58  Q
    ||||||||||||||| ||||| | |||||||||| |||||||| |||||    
T  3284940 tagacagttgcaattatcaaggttcatggtatatggagtagagcacata 3284988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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