View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3436-Insertion-15 (Length: 210)
Name: NF3436-Insertion-15
Description: NF3436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3436-Insertion-15 |
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| [»] scaffold0012 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 34505676 - 34505816
Alignment:
| Q |
8 |
cctttcatatagaagaaattagacacaagcctgttgtagttattcggttatctacatccctaagaaacgtttcagttgatctaaattcttaatttcaaag |
107 |
Q |
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| T |
34505676 |
cctttcatatagaagaaattagacacaagcctgttgtagttattcggttatctacatccctaagaaacgtttcagttgatctaaattcttaatttcaaat |
34505775 |
T |
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| Q |
108 |
gcaaggataggaacaagcatttgcaacttattctttcttgg |
148 |
Q |
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| T |
34505776 |
gcaaggatagtaacaagcatttgcaacttattctttcttgg |
34505816 |
T |
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Target: scaffold0012 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 155431 - 155483
Alignment:
| Q |
119 |
aacaagcatttgcaacttattctttcttggtaattcaactgcttcacaagtcc |
171 |
Q |
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| T |
155431 |
aacaagcatttgcagcttcttttttcttggtaattcagctgcttcccaagtcc |
155483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 159449 - 159493
Alignment:
| Q |
119 |
aacaagcatttgcaacttattctttcttggtaattcaactgcttc |
163 |
Q |
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| T |
159449 |
aacaagcatttgcaacgtattctttttcggtaattcaactgcttc |
159493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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