View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3436-Insertion-16 (Length: 171)
Name: NF3436-Insertion-16
Description: NF3436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3436-Insertion-16 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 3e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 3e-80
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 33793414 - 33793579
Alignment:
| Q |
8 |
cttaatcaattaggatcaatgttttagcttcctattttatcttgccgtcattaagaagtata--gtctctcttcctctacgagtaaactcacgtctctat |
105 |
Q |
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| T |
33793414 |
cttaatcaattaggatcaatgttttagcttcctattttatcttgccgtcattaagaagtatacagtctctcttcctctacgagtaaactcacgtctctat |
33793513 |
T |
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| Q |
106 |
tattaagtctgcatatccttcataccattagattcacaagccaccaccaattggtacaatccaaaa |
171 |
Q |
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| T |
33793514 |
tattaagtctgcatattcttcataccattagattcacaagccaccaccaattggtacaatccaaaa |
33793579 |
T |
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Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 90 - 170
Target Start/End: Complemental strand, 8311715 - 8311635
Alignment:
| Q |
90 |
aaactcacgtctctattattaagtctgcatatccttcataccattagattcacaagccaccaccaattggtacaatccaaa |
170 |
Q |
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| T |
8311715 |
aaactcacgcctctatcattaagtctgcatattcttcataccatcagattcacacgcctccaccaattgctaccatccaaa |
8311635 |
T |
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