View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3436-Insertion-17 (Length: 120)

Name: NF3436-Insertion-17
Description: NF3436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3436-Insertion-17
NF3436-Insertion-17
[»] chr6 (12 HSPs)
chr6 (8-120)||(23634123-23634235)
chr6 (32-120)||(23587113-23587201)
chr6 (8-117)||(23594155-23594264)
chr6 (17-120)||(23391411-23391514)
chr6 (34-120)||(23583231-23583317)
chr6 (23-120)||(23283635-23283732)
chr6 (10-116)||(23506945-23507051)
chr6 (35-120)||(23289960-23290045)
chr6 (17-120)||(23266511-23266614)
chr6 (17-120)||(23251980-23252083)
chr6 (17-120)||(23257956-23258059)
chr6 (17-120)||(23247568-23247671)


Alignment Details
Target: chr6 (Bit Score: 113; Significance: 1e-57; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 23634123 - 23634235
Alignment:
Q  8 aatgccgcgacatcatgtgctcgtgctgccatctcggccgttggaaaagtccctagccaaatcttagtcttcttgttaggctccctcatttcacacaccc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23634123 aatgccgcgacatcatgtgctcgtgctgccatctcggccgttggaaaagtccctagccaaatcttagtcttcttgttaggctccctcatttcacacaccc 23634222  T
Q  108 atttatctaagtt 120  Q
    |||||||||||||    
T  23634223 atttatctaagtt 23634235  T

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Target: chr6; HSP #2
Raw Score: 81; E-Value: 1e-38
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 23587113 - 23587201
Alignment:
Q  32 gctgccatctcggccgttggaaaagtccctagccaaatcttagtcttcttgttaggctccctcatttcacacacccatttatctaagtt 120  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23587113 gctgccatctcggcagttggaaaagtccctagccaaatcttagtcttcttgttaggctccctcatttcacaaacccatttatctaagtt 23587201  T

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Target: chr6; HSP #3
Raw Score: 74; E-Value: 2e-34
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 23594155 - 23594264
Alignment:
Q  8 aatgccgcgacatcatgtgctcgtgctgccatctcggccgttggaaaagtccctagccaaatcttagtcttcttgttaggctccctcatttcacacaccc 107  Q
    |||| |||||||||||| ||||||||| ||||||| ||| |||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  23594155 aatgtcgcgacatcatgggctcgtgcttccatctcagccattggaaaagttcctagccatatcttagtcatcttgttaggctccctcatttcacacaccc 23594254  T
Q  108 atttatctaa 117  Q
    ||||| ||||    
T  23594255 atttacctaa 23594264  T

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Target: chr6; HSP #4
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 23391411 - 23391514
Alignment:
Q  17 acatcatgtgctcgtgctgccatctcggccgttggaaaagtccctagccaaatcttagtcttcttgttaggctccctcatttcacacacccatttatcta 116  Q
    |||||||||||||| ||||||||||| || ||||||||||| ||||||||||| ||||||||||| || || ||||||||||||||||||||||||||||    
T  23391411 acatcatgtgctcgggctgccatctccgcagttggaaaagtgcctagccaaattttagtcttcttatttggttccctcatttcacacacccatttatcta 23391510  T
Q  117 agtt 120  Q
    ||||    
T  23391511 agtt 23391514  T

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Target: chr6; HSP #5
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 23583231 - 23583317
Alignment:
Q  34 tgccatctcggccgttggaaaagtccctagccaaatcttagtcttcttgttaggctccctcatttcacacacccatttatctaagtt 120  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  23583231 tgccatctccgcagttggaaaagtccctagccaaatcttagtcttcttgttaggcttcctcatttcacaaacccatttatctaagtt 23583317  T

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Target: chr6; HSP #6
Raw Score: 70; E-Value: 5e-32
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 23283635 - 23283732
Alignment:
Q  23 tgtgctcgtgctgccatctcggccgttggaaaagtccctagccaaatcttagtcttcttgttaggctccctcatttcacacacccatttatctaagtt 120  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||| ||||| || |||||||||||||| |||||||||||||||||    
T  23283635 tgtgctcgtgcagccatctcagccgttggaaaagtccctagccaaatcctagtctttttgttgggttccctcatttcacaaacccatttatctaagtt 23283732  T

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Target: chr6; HSP #7
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 23506945 - 23507051
Alignment:
Q  10 tgccgcgacatcatgtgctcgtgctgccatctcggccgttggaaaagtccctagccaaatcttagtcttcttgttaggctccctcatttcacacacccat 109  Q
    |||||| |||||||| || || |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||  || |||||||||||||||    
T  23506945 tgccgcaacatcatgggcccgagctgccatctcggctgttggaaaagttcctagccaaatcttggtctttttgttaggctgtcttatttcacacacccat 23507044  T
Q  110 ttatcta 116  Q
    |||||||    
T  23507045 ttatcta 23507051  T

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Target: chr6; HSP #8
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 35 - 120
Target Start/End: Original strand, 23289960 - 23290045
Alignment:
Q  35 gccatctcggccgttggaaaagtccctagccaaatcttagtcttcttgttaggctccctcatttcacacacccatttatctaagtt 120  Q
    ||||||||||| |||| ||||||||||||||||||| |||||||||| || || ||||||||||||||||||||||||||||||||    
T  23289960 gccatctcggctgttgcaaaagtccctagccaaatcctagtcttcttatttggttccctcatttcacacacccatttatctaagtt 23290045  T

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Target: chr6; HSP #9
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 23266511 - 23266614
Alignment:
Q  17 acatcatgtgctcgtgctgccatctcggccgttggaaaagtccctagccaaatcttagtcttcttgttaggctccctcatttcacacacccatttatcta 116  Q
    ||||| || ||||| |||||||||||||| ||||||||||| |||||||||||  |||||||| |||| || |||||||||||||| |||||||||||||    
T  23266511 acatcgtgggctcgggctgccatctcggctgttggaaaagttcctagccaaattctagtcttcgtgttgggttccctcatttcacaaacccatttatcta 23266610  T
Q  117 agtt 120  Q
    ||||    
T  23266611 agtt 23266614  T

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Target: chr6; HSP #10
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 23251980 - 23252083
Alignment:
Q  17 acatcatgtgctcgtgctgccatctcggccgttggaaaagtccctagccaaatcttagtcttcttgttaggctccctcatttcacacacccatttatcta 116  Q
    ||||| || ||||| |||||||||||||| ||||||||||| |||||||||||| || ||||  |||| ||||||||||||||||| |||||||||| ||    
T  23251980 acatcgtgggctcgggctgccatctcggctgttggaaaagttcctagccaaatcctattctttgtgttcggctccctcatttcacaaacccatttattta 23252079  T
Q  117 agtt 120  Q
    ||||    
T  23252080 agtt 23252083  T

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Target: chr6; HSP #11
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 23257956 - 23258059
Alignment:
Q  17 acatcatgtgctcgtgctgccatctcggccgttggaaaagtccctagccaaatcttagtcttcttgttaggctccctcatttcacacacccatttatcta 116  Q
    ||||| || ||||| |||||||| ||||  |||||||||||||| ||||||||| | |||||  |||| || ||||||||||||||||||||||||||||    
T  23257956 acatcgtgggctcgggctgccatttcgggtgttggaaaagtccccagccaaatcctggtctttgtgttgggttccctcatttcacacacccatttatcta 23258055  T
Q  117 agtt 120  Q
    ||||    
T  23258056 agtt 23258059  T

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Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 23247568 - 23247671
Alignment:
Q  17 acatcatgtgctcgtgctgccatctcggccgttggaaaagtccctagccaaatcttagtcttcttgttaggctccctcatttcacacacccatttatcta 116  Q
    ||||| || ||||| || |||||||| |  ||||||||||| || ||||||||| || ||||  |||| ||||||||||||||||| |||||||||| ||    
T  23247568 acatcgtgggctcgggcagccatctccggtgttggaaaagttcccagccaaatcctattctttgtgttcggctccctcatttcacaaacccatttattta 23247667  T
Q  117 agtt 120  Q
    ||||    
T  23247668 agtt 23247671  T

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