View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3436-Insertion-3 (Length: 1089)

Name: NF3436-Insertion-3
Description: NF3436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3436-Insertion-3
NF3436-Insertion-3
[»] chr7 (13 HSPs)
chr7 (713-1089)||(23778929-23779308)
chr7 (239-547)||(23778500-23778806)
chr7 (243-506)||(23754585-23754846)
chr7 (840-1049)||(23755318-23755529)
chr7 (8-129)||(23772197-23772324)
chr7 (844-997)||(23753302-23753456)
chr7 (425-506)||(23752875-23752956)
chr7 (182-239)||(44495702-44495760)
chr7 (180-249)||(38444021-38444091)
chr7 (180-236)||(21433047-21433104)
chr7 (323-388)||(23752659-23752723)
chr7 (180-236)||(32072300-32072357)
chr7 (180-236)||(36720992-36721049)
[»] chr8 (4 HSPs)
chr8 (180-238)||(30865332-30865392)
chr8 (181-238)||(9317025-9317083)
chr8 (180-236)||(3444119-3444176)
chr8 (180-236)||(22323940-22323997)
[»] chr4 (1 HSPs)
chr4 (182-236)||(46059125-46059180)
[»] chr3 (1 HSPs)
chr3 (180-227)||(588265-588312)
[»] chr6 (1 HSPs)
chr6 (180-226)||(34751940-34751986)
[»] chr5 (3 HSPs)
chr5 (180-236)||(4960102-4960159)
chr5 (180-236)||(13668508-13668565)
chr5 (182-227)||(41372487-41372532)
[»] chr2 (4 HSPs)
chr2 (192-236)||(4980258-4980303)
chr2 (182-227)||(35408850-35408895)
chr2 (180-236)||(38806845-38806902)
chr2 (180-236)||(40537001-40537058)
[»] chr1 (6 HSPs)
chr1 (180-236)||(1039699-1039756)
chr1 (180-236)||(1046605-1046662)
chr1 (182-227)||(3569388-3569433)
chr1 (180-236)||(12501765-12501822)
chr1 (182-227)||(27209181-27209226)
chr1 (180-236)||(42616697-42616754)


Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 713 - 1089
Target Start/End: Original strand, 23778929 - 23779308
Alignment:
Q  713 ttaactatctataatctaatttcatccgtcaataattaatgttacgttaaactttgaaaacaagaaataaatataaacgaaataacttttatacgaaaac 812  Q
    |||| |||||||||||| ||||||  ||||||||||||||||||| || |||||||||||  ||||||||||||||||||||| |  |||||||||   |    
T  23778929 ttaattatctataatctcatttcacacgtcaataattaatgttacattgaactttgaaaaagagaaataaatataaacgaaatca--tttatacga---c 23779023  T
Q  813 gacaattcaaaagaaaccaatggaattgttagttacttacgtccgcacttataaccaatggggcgattagcaaagttgcagcgtttagggatagtaacag 912  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23779024 gacaattcagaagaaactaatggaattgttagttacttacgtccgcacttataaccaacggggcgattagcaaagttgcagcgtttagggatagtaacag 23779123  T
Q  913 caatttgagggttaacaccagacattttagc-acgtttgagagcaaaacagcacaaagacaacttggattctgaccaggtttcttagtccgagcacaaca 1011  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  23779124 caatttgaggattaacaccagacattttagcaacgtttgagagcaaaacagcacaaagacaacttggattctgaccaagtttcttagtctgagcacaaca 23779223  T
Q  1012 agtttgtgagaaactagca-tttcatctggtgctgcac-tgcaca--gagctagc-taaatgct--catatctggtgtagtacct 1089  Q
    ||||||||||| ||||||| |||||||| ||||||||| ||||||  |||||||| ||||||||  |||||||||||||||||||    
T  23779224 agtttgtgagacactagcattttcatcttgtgctgcacttgcacaaggagctagcttaaatgcttccatatctggtgtagtacct 23779308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 239 - 547
Target Start/End: Original strand, 23778500 - 23778806
Alignment:
Q  239 attaaaatattatctaagagcatcaactaaaatgttttagtaggcacataaaataaaccacagaaagagaa--tgttttattcatgagggtgtacacaag 336  Q
    |||||||||| || |||||||||| ||||||| |||||||||||||||||||||||||||| || | ||||  |||||||||||||||||||||||||||    
T  23778500 attaaaatatgatgtaagagcatccactaaaaagttttagtaggcacataaaataaaccactgataaagaacatgttttattcatgagggtgtacacaag 23778599  T
Q  337 tgagctgctagcttttatccacactataaacaaacaagaaagttacaatacaacacaacaaagttgtggtgaccataatatacagtagctaacagcatca 436  Q
    | ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    ||||||||||||| ||    
T  23778600 tcagctgctaggtcttatccacactataaacaaacaagaaagttacaatacaacacaactaagttgtgatgaccataata----gtagctaacagcaaca 23778695  T
Q  437 atgcatatcccatttatgtttgttttcatcaacaacctcaactctttcaaggaagagtgtaagctgcaaaatcagaattttataagagtagttagtatat 536  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23778696 atgcgtatcccatttatgtttgctttcatcaacaacctcaactctttcaaggaagagtgtaagctgcaaaatcagaattttacaagagtagttagtatat 23778795  T
Q  537 tgatccatcaa 547  Q
    |||||||||||    
T  23778796 tgatccatcaa 23778806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 243 - 506
Target Start/End: Original strand, 23754585 - 23754846
Alignment:
Q  243 aaatattatctaagagcatcaactaaaatgttttagtaggcacataaaataaaccacagaaagagaa--tgttttattcatgagggtgtacacaagtgag 340  Q
    |||||| || ||| |||||| |||||  | |||| | |||||||||||||||| ||| ||||| |||  |||||||||||||||||||||||||||||||    
T  23754585 aaatataatgtaaaagcatccactaactttttttggcaggcacataaaataaaacactgaaagtgaaactgttttattcatgagggtgtacacaagtgag 23754684  T
Q  341 ctgctagcttttatccacactataaacaaacaagaaagttacaatacaacacaacaaagttgtggtgaccataatatacagtagctaacagcatcaatgc 440  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    |||||||||||||||||||||    
T  23754685 ctgctagctcttatccacactataaacaaacaagaaagttacaatacaacacaactaagttgtggtgaccataat----agtagctaacagcatcaatgc 23754780  T
Q  441 atatcccatttatgtttgttttcatcaacaacctcaactctttcaaggaagagtgtaagctgcaaa 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23754781 atatcccatttatgtttgttttcatcaacaacctcaactctttcaagggagagtgtaagctgcaaa 23754846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 840 - 1049
Target Start/End: Original strand, 23755318 - 23755529
Alignment:
Q  840 gttagttacttacgtccgcacttataaccaatggggcgattagcaaagttgcagcgtttagggatagtaacagcaatttgagggttaacaccagacattt 939  Q
    |||||| |||||||||| ||||| ||||||| ||| |||| ||||| |||||| || |||||||||||||||||||||||||||||| ||||||||||||    
T  23755318 gttagtaacttacgtccacacttgtaaccaacgggacgatcagcaaggttgcaacgcttagggatagtaacagcaatttgagggttagcaccagacattt 23755417  T
Q  940 tagc-acgtttgagagcaaaacagcacaaagacaacttggattctgaccaggtttcttagtccgagcacaacaagtttgtgagaaactagca-tttcatc 1037  Q
    |||| |||||||| |||| ||||||||||||||||||||||||||||||| ||||||||  | ||||||||||| ||||||||| ||||||| |||||||    
T  23755418 tagcaacgtttgaaagcataacagcacaaagacaacttggattctgaccaagtttcttaacctgagcacaacaactttgtgagacactagcattttcatc 23755517  T
Q  1038 tggtgctgcact 1049  Q
    |  |||||||||    
T  23755518 ttttgctgcact 23755529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 23772197 - 23772324
Alignment:
Q  8 agacccttgtgcattcatcaatctattaatccatcaacattcttgtgactccttaggtgacatgtgataattat------ttgaatcacgcagcgaagat 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||| ||||||| |||    
T  23772197 agacccttgtgcattcatcaatctattaatccatcaacattcttgtgactccttaggtgacatgtgataattatggttcattgaatcatgcagcgacgat 23772296  T
Q  102 gacacttcgtgccaaatgttgattgggt 129  Q
    ||||||| ||||||||||||||||||||    
T  23772297 gacactttgtgccaaatgttgattgggt 23772324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 844 - 997
Target Start/End: Original strand, 23753302 - 23753456
Alignment:
Q  844 gttacttacgtccgcacttataaccaatggggcgattagcaaagttgcagcgtttagggatagtaacagcaatttgagggttaacaccagacattttagc 943  Q
    |||| ||||| || ||||| ||||| |  ||||||| ||||| |||||| || ||||||||||||  |||||||||||||||||||||||||||||||||    
T  23753302 gttatttacgcccacacttgtaaccgacagggcgatcagcaaggttgcaacgcttagggatagtactagcaatttgagggttaacaccagacattttagc 23753401  T
Q  944 a-cgtttgagagcaaaacagcacaaagacaacttggattctgaccaggtttctta 997  Q
    | |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23753402 aacgtttgagagcaaaacagcacaaagacaacttggattctgaccaagtttctta 23753456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 425 - 506
Target Start/End: Original strand, 23752875 - 23752956
Alignment:
Q  425 ctaacagcatcaatgcatatcccatttatgtttgttttcatcaacaacctcaactctttcaaggaagagtgtaagctgcaaa 506  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23752875 ctaacagcatcaatggatatcccatttatgtttgttttcatcaacaacctcaactttttcaaggaagagtgtaagctgcaaa 23752956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 44495760 - 44495702
Alignment:
Q  182 ttaaggaaccaaaatgatattaattaaatacttaatggaccaaaa-agcatttaagtca 239  Q
    |||||| ||||||||||||  |||||||||||||| ||||||||| |||||||||||||    
T  44495760 ttaagggaccaaaatgataccaattaaatacttaagggaccaaaagagcatttaagtca 44495702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 38444091 - 38444021
Alignment:
Q  180 agttaaggaaccaaaatgatattaattaaatacttaatggaccaaaa-agcatttaagtcattaaaatatt 249  Q
    ||||||| |||||||| ||||  |||||||||||||| ||||||||| |||||||||| | |||| |||||    
T  38444091 agttaagcaaccaaaacgataccaattaaatacttaagggaccaaaagagcatttaagcctttaagatatt 38444021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 21433047 - 21433104
Alignment:
Q  180 agttaaggaaccaaaatgatattaattaaatacttaatggaccaaaa-agcatttaag 236  Q
    |||||||| ||||||  ||||  |||||||||||||||||||||||| ||||||||||    
T  21433047 agttaagggaccaaagcgataccaattaaatacttaatggaccaaaagagcatttaag 21433104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 323 - 388
Target Start/End: Original strand, 23752659 - 23752723
Alignment:
Q  323 agggtgtacacaagtgagctgctagcttttatccacactataaacaaacaagaaagttacaataca 388  Q
    ||||| ||||| | |||||| |||||| |||||||| |||||| ||| ||||||||||||||||||    
T  23752659 agggtttacaccactgagctactagctcttatccacgctataaccaa-caagaaagttacaataca 23752723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 32072357 - 32072300
Alignment:
Q  180 agttaaggaaccaaaatgatattaattaaatacttaatggaccaaaa-agcatttaag 236  Q
    |||||||| ||||||  ||||| |||||||||||||| ||||||||| ||||||||||    
T  32072357 agttaagggaccaaagcgatatcaattaaatacttaagggaccaaaagagcatttaag 32072300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 36720992 - 36721049
Alignment:
Q  180 agttaaggaaccaaaatgatattaattaaatacttaatggaccaaaa-agcatttaag 236  Q
    |||||||| ||||||  ||||| |||||||||||||| ||||||||| ||||||||||    
T  36720992 agttaagggaccaaagcgatatcaattaaatacttaagggaccaaaagagcatttaag 36721049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 30865332 - 30865392
Alignment:
Q  180 agttaaggaaccaaaatgatattaattaaatacttaatggaccaaaa--agcatttaagtc 238  Q
    |||||||| ||||||||||||  |||||||||||||| |||||||||  ||||||||||||    
T  30865332 agttaagggaccaaaatgataccaattaaatacttaagggaccaaaaatagcatttaagtc 30865392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 9317083 - 9317025
Alignment:
Q  181 gttaaggaaccaaaatgatattaattaaatacttaatggaccaaaa-agcatttaagtc 238  Q
    ||||||| |||||| |||||| || ||||||||||| ||||||||| ||||||||||||    
T  9317083 gttaagggaccaaagtgatatcaaataaatacttaagggaccaaaagagcatttaagtc 9317025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 3444119 - 3444176
Alignment:
Q  180 agttaaggaaccaaaatgatattaattaaatacttaatggacc-aaaaagcatttaag 236  Q
    |||||||| ||||||  |||| ||||||||||||||| ||||| ||||||||||||||    
T  3444119 agttaagggaccaaagcgatactaattaaatacttaagggaccaaaaaagcatttaag 3444176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 22323940 - 22323997
Alignment:
Q  180 agttaaggaaccaaaatgatattaattaaatacttaatggaccaaaa-agcatttaag 236  Q
    |||||||| |||||| |||||  |||||||||||||| ||||||||| ||||||||||    
T  22323940 agttaagggaccaaagtgataccaattaaatacttaagggaccaaaagagcatttaag 22323997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 46059125 - 46059180
Alignment:
Q  182 ttaaggaaccaaaatgatattaattaaatacttaatggaccaaaa-agcatttaag 236  Q
    ||||||||||||| ||||| |||||||||| |||| ||||||||| ||||||||||    
T  46059125 ttaaggaaccaaagtgatactaattaaatagttaagggaccaaaagagcatttaag 46059180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 588312 - 588265
Alignment:
Q  180 agttaaggaaccaaaatgatattaattaaatacttaatggaccaaaaa 227  Q
    |||||||| ||||||| ||||||||||||||| |||| ||||||||||    
T  588312 agttaagggaccaaaacgatattaattaaatagttaagggaccaaaaa 588265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 34751940 - 34751986
Alignment:
Q  180 agttaaggaaccaaaatgatattaattaaatacttaatggaccaaaa 226  Q
    |||||||| ||||||||||||| ||||||||| |||| |||||||||    
T  34751940 agttaagggaccaaaatgatatcaattaaatagttaagggaccaaaa 34751986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 4960102 - 4960159
Alignment:
Q  180 agttaaggaaccaaaatgatattaattaaatacttaatggaccaaaa-agcatttaag 236  Q
    |||||||| |||||| |||||||||||||||| |||| |||| |||| ||||||||||    
T  4960102 agttaagggaccaaagtgatattaattaaatagttaagggactaaaagagcatttaag 4960159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 13668508 - 13668565
Alignment:
Q  180 agttaaggaaccaaaatgatattaattaaatacttaatggaccaaaa-agcatttaag 236  Q
    |||||||| ||||||  ||||  |||||||||||||||||||||||| ||||||||||    
T  13668508 agttaagggaccaaagcgataccaattaaatacttaatggaccaaaagagcatttaag 13668565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 41372487 - 41372532
Alignment:
Q  182 ttaaggaaccaaaatgatattaattaaatacttaatggaccaaaaa 227  Q
    |||||| ||||||| ||||||||||||||| |||| ||||||||||    
T  41372487 ttaagggaccaaaacgatattaattaaatagttaagggaccaaaaa 41372532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 4980258 - 4980303
Alignment:
Q  192 aaaatgatattaattaaatacttaatggaccaaaa-agcatttaag 236  Q
    |||||||||| |||||||||||||| ||||||||| ||||||||||    
T  4980258 aaaatgatatcaattaaatacttaaaggaccaaaagagcatttaag 4980303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 35408850 - 35408895
Alignment:
Q  182 ttaaggaaccaaaatgatattaattaaatacttaatggaccaaaaa 227  Q
    |||||||||||||  |||| |||||||||| |||||||||||||||    
T  35408850 ttaaggaaccaaagcgatactaattaaatagttaatggaccaaaaa 35408895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 38806902 - 38806845
Alignment:
Q  180 agttaaggaaccaaaatgatattaattaaatacttaatggaccaaaa-agcatttaag 236  Q
    |||||||| ||||||||||||  ||||||||| |||| ||||||||| ||||||||||    
T  38806902 agttaagggaccaaaatgataccaattaaatagttaagggaccaaaagagcatttaag 38806845  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 40537058 - 40537001
Alignment:
Q  180 agttaaggaaccaaaatgatattaattaaatacttaatggaccaaaa-agcatttaag 236  Q
    |||||||| ||||||| ||||| || ||||||||||| ||||||||| ||||||||||    
T  40537058 agttaagggaccaaaacgatatcaactaaatacttaaaggaccaaaagagcatttaag 40537001  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 1039756 - 1039699
Alignment:
Q  180 agttaaggaaccaaaatgatattaattaaatacttaatggaccaaaa-agcatttaag 236  Q
    |||||||| ||||||| ||||| ||||||||||||||  |||||||| ||||||||||    
T  1039756 agttaagggaccaaaacgatatcaattaaatacttaaaagaccaaaagagcatttaag 1039699  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 1046662 - 1046605
Alignment:
Q  180 agttaaggaaccaaaatgatattaattaaatacttaatggaccaaaa-agcatttaag 236  Q
    |||||||| ||||||| ||||| ||||||||||||||  |||||||| ||||||||||    
T  1046662 agttaagggaccaaaacgatatcaattaaatacttaaaagaccaaaagagcatttaag 1046605  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 3569433 - 3569388
Alignment:
Q  182 ttaaggaaccaaaatgatattaattaaatacttaatggaccaaaaa 227  Q
    |||||||||||||| |||| |||||||||| |||| ||||||||||    
T  3569433 ttaaggaaccaaaacgatactaattaaataattaagggaccaaaaa 3569388  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 12501765 - 12501822
Alignment:
Q  180 agttaaggaaccaaaatgatattaattaaatacttaatggacc-aaaaagcatttaag 236  Q
    |||||||| ||||||| |||| ||||||||||||||| ||||| ||| ||||||||||    
T  12501765 agttaagggaccaaaacgatactaattaaatacttaagggacctaaagagcatttaag 12501822  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 27209226 - 27209181
Alignment:
Q  182 ttaaggaaccaaaatgatattaattaaatacttaatggaccaaaaa 227  Q
    |||||| |||||| |||||||||||||||| |||| ||||||||||    
T  27209226 ttaagggaccaaagtgatattaattaaatagttaagggaccaaaaa 27209181  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 42616754 - 42616697
Alignment:
Q  180 agttaaggaaccaaaatgatattaattaaatacttaatggaccaaaa-agcatttaag 236  Q
    |||||||| ||||||| ||||  |||||||||||||| ||||||||| ||||||||||    
T  42616754 agttaagggaccaaaacgataccaattaaatacttaaaggaccaaaagagcatttaag 42616697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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