View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3436-Insertion-4 (Length: 1068)

Name: NF3436-Insertion-4
Description: NF3436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3436-Insertion-4
NF3436-Insertion-4
[»] chr5 (12 HSPs)
chr5 (179-712)||(41343630-41344155)
chr5 (776-1008)||(41344218-41344453)
chr5 (97-183)||(41343481-41343567)
chr5 (94-159)||(43129536-43129601)
chr5 (97-161)||(34335337-34335401)
chr5 (94-161)||(37873678-37873745)
chr5 (97-161)||(13166953-13167017)
chr5 (97-161)||(22188698-22188762)
chr5 (97-161)||(42921697-42921761)
chr5 (94-161)||(25663072-25663139)
chr5 (97-156)||(32269840-32269899)
chr5 (103-161)||(23423920-23423978)
[»] scaffold0148 (1 HSPs)
scaffold0148 (94-161)||(33250-33317)
[»] chr4 (10 HSPs)
chr4 (97-161)||(50483239-50483303)
chr4 (97-161)||(600735-600799)
chr4 (94-182)||(56462146-56462233)
chr4 (94-161)||(34107736-34107803)
chr4 (96-183)||(747811-747897)
chr4 (94-181)||(46391355-46391440)
chr4 (97-161)||(55933505-55933567)
chr4 (96-183)||(712635-712721)
chr4 (94-161)||(7536611-7536678)
chr4 (97-160)||(11562899-11562962)
[»] chr3 (10 HSPs)
chr3 (94-162)||(54508424-54508492)
chr3 (94-183)||(25325008-25325096)
chr3 (97-161)||(51234616-51234680)
chr3 (97-161)||(53785709-53785773)
chr3 (97-161)||(7900858-7900922)
chr3 (97-161)||(52741555-52741619)
chr3 (96-159)||(7502054-7502117)
chr3 (97-183)||(39583272-39583357)
chr3 (97-161)||(44198767-44198831)
chr3 (94-161)||(37133039-37133106)
[»] chr7 (17 HSPs)
chr7 (94-161)||(22197986-22198053)
chr7 (94-161)||(22239768-22239835)
chr7 (96-158)||(6635005-6635067)
chr7 (97-161)||(19277293-19277357)
chr7 (98-161)||(43856874-43856937)
chr7 (99-161)||(5972261-5972323)
chr7 (94-183)||(30216098-30216186)
chr7 (97-161)||(982949-983013)
chr7 (97-161)||(21326881-21326945)
chr7 (94-161)||(40726520-40726587)
chr7 (94-162)||(34772781-34772848)
chr7 (97-157)||(47679129-47679189)
chr7 (97-161)||(48539181-48539245)
chr7 (94-161)||(5825273-5825340)
chr7 (98-161)||(27521471-27521534)
chr7 (94-161)||(28517327-28517394)
chr7 (94-161)||(42295224-42295291)
[»] chr2 (8 HSPs)
chr2 (97-183)||(18744997-18745082)
chr2 (97-161)||(4413109-4413173)
chr2 (97-161)||(28225000-28225064)
chr2 (96-161)||(13147142-13147207)
chr2 (97-161)||(20142768-20142832)
chr2 (97-161)||(34814862-34814925)
chr2 (97-161)||(41867951-41868015)
chr2 (127-180)||(7760918-7760970)
[»] chr1 (11 HSPs)
chr1 (95-183)||(2898681-2898768)
chr1 (97-183)||(4862032-4862117)
chr1 (97-161)||(29169836-29169900)
chr1 (97-161)||(34644566-34644630)
chr1 (97-157)||(45659691-45659751)
chr1 (95-161)||(28041168-28041234)
chr1 (96-161)||(24177553-24177618)
chr1 (97-161)||(31737366-31737430)
chr1 (94-161)||(21473003-21473070)
chr1 (97-162)||(2764478-2764543)
chr1 (98-159)||(22346897-22346958)
[»] chr8 (5 HSPs)
chr8 (97-183)||(24125007-24125092)
chr8 (97-182)||(8115792-8115875)
chr8 (94-164)||(8540417-8540487)
chr8 (97-161)||(3187969-3188033)
chr8 (97-183)||(38815273-38815358)
[»] chr6 (6 HSPs)
chr6 (98-158)||(959583-959643)
chr6 (97-161)||(33220754-33220818)
chr6 (97-182)||(4165965-4166049)
chr6 (97-161)||(4206639-4206703)
chr6 (96-183)||(28625909-28625995)
chr6 (96-161)||(13398224-13398289)
[»] scaffold0009 (1 HSPs)
scaffold0009 (97-160)||(103107-103170)
[»] scaffold0490 (1 HSPs)
scaffold0490 (100-161)||(6334-6395)


Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 179 - 712
Target Start/End: Original strand, 41343630 - 41344155
Alignment:
Q  179 gcatactatgtacttagaagtgaggaattacgagttacaacccacatctcgacatatcaaatatctatacaannnnnnnactatgtgagctaaatttact 278  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||       |    ||||||||||||||||    
T  41343630 gcatactatgtacttagaagtgaggaattacgagttacaacccgtgtctcgacatatcaaatatctatacaattttttta----gtgagctaaatttact 41343725  T
Q  279 agactaatcgttctctttctaaatagataaacattaaagaaaacaagatattacctatagttccaaccacaatttgccatgtgatttccacaggagccgg 378  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41343726 agactaatcattctctttctaaatagataaacattaaaggaaacaagatattacctatagttccaaccacaatttgccatgtgatttcgacaggagccgg 41343825  T
Q  379 atcaagtactgtggttacatcactcacagacacaacacctatccttgttcttctttttgttgttgttctagcattcttaaccccaaaatcacaggttttt 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  41343826 atcaagtactgtggttacatcactcacagacacaacacctatccttgttcttctttttgttgttgttcttgcattcttaaccccaaaatcccaggttttt 41343925  T
Q  479 ctcactgttgaggaacaacaattatgtgtaactatgttcctagctttggcaatagttaaagaaggcagagaacaggaaactaaagcttccatagttatag 578  Q
    ||||||||| |||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||      ||||    
T  41343926 ctcactgttaaggaacaacaatcacgtgtaactatgttcctagctttggtaatagttaaagaaggcagagaacagcaaactaaagcttcc------atag 41344019  T
Q  579 tatcacttaattaacaactaaaatccaaactctttttcatcttacaaaattcacaataataacaagatg---ttatatgaaaaagaggctacgtgggctt 675  Q
    |||||||||||||||||||||||||| ||||||||||||||  ||||||||||||| ||||||||||||   |||||||||||||||||||||||| |||    
T  41344020 tatcacttaattaacaactaaaatcc-aactctttttcatcaaacaaaattcacaacaataacaagatgttattatatgaaaaagaggctacgtggactt 41344118  T
Q  676 tttcagctcacagtctcacggccccacgcagccacac 712  Q
    |||||||||||||||||||||||||||||||||||||    
T  41344119 tttcagctcacagtctcacggccccacgcagccacac 41344155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 776 - 1008
Target Start/End: Original strand, 41344218 - 41344453
Alignment:
Q  776 ggggaataatttctaactcttataaagtattcatattttgattaacannnnnnnnn-attgaattggaatccagaagtgtgttcctccttaaaatttaaa 874  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||          ||||||||| ||||| ||||||||||||||||||| |||| ||    
T  41344218 ggggaataatttctaacccttataaagtattcatattttgattaacaattttattttattgaattgaaatccggaagtgtgttcctccttaagatttgaa 41344317  T
Q  875 gtttgattttcttcgatgtccatttgaatgcgctaatttaacatttattactata--tatgttatatatgatgatgtaaac-aaaaagaacatatattta 971  Q
    ||||||||||| || |||||||||| |||  ||||||||||| ||||||||||||  |||||||||||||||||||||||| ||||| |||||||||||     
T  41344318 gtttgattttcctcaatgtccatttaaatatgctaatttaacttttattactataattatgttatatatgatgatgtaaacaaaaaacaacatatatttt 41344417  T
Q  972 ggtttctaatattattttatcacaactcccacgaaaa 1008  Q
    ||||| ||||||||||||||||  |||||||||||||    
T  41344418 ggtttataatattattttatca-tactcccacgaaaa 41344453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 41343481 - 41343567
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 183  Q
    |||||||||||||| ||||||||| |||| ||||||| || |||||||||||| ||||||||||||||||| |||||||||||||||    
T  41343481 ttttataccatttgttttcgacatattcggttttctagcaccagaggttgttggccttctacataatagttcaaaggatcatgcata 41343567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 159
Target Start/End: Complemental strand, 43129601 - 43129536
Alignment:
Q  94 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctaca 159  Q
    ||||||| ||||||||||||| |||||||||| ||| |||||| |||| ||| |||||||||||||    
T  43129601 tgtttttctaccatttgcttttgacattttcggtttcctaacaccagatgtttttgaccttctaca 43129536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 34335401 - 34335337
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||||| ||| |||| |||||| ||||| ||| |||||| |||||||||||||||||    
T  34335401 ttttataccatttgtttttgacactttcgactttctgacaccagaggctgttgaccttctacata 34335337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 37873678 - 37873745
Alignment:
Q  94 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    ||||||||||||||||||||| |||| ||| |  || ||| || ||||||||||||||||||||||||    
T  37873678 tgtttttataccatttgcttttgacacttttggcttcctagcaccagaggttgttgaccttctacata 37873745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 13166953 - 13167017
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||||||||| |||| |||||  || ||| ||||||||  |||||||||||||||||    
T  13166953 ttttataccatttgcttttgacactttcggcttcctagcatcagagactgttgaccttctacata 13167017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 22188698 - 22188762
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||| ||||| ||| |||| |||||||||| || || |||||| |||||||||||||||||    
T  22188698 ttttatactatttgtttttgacactttcgattttttagcaccagaggctgttgaccttctacata 22188762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 42921761 - 42921697
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||||||||  |||| ||||| ||| ||| || |||||||||||| |||||||||||    
T  42921761 ttttataccatttgcttatgacactttcggtttcctagcaccagaggttgttggccttctacata 42921697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 25663072 - 25663139
Alignment:
Q  94 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    ||||||||||||||||||||| |||| ||||   || ||| ||||||| |||||||| ||||||||||    
T  25663072 tgtttttataccatttgcttttgacactttcagcttcctagcatcagaagttgttgatcttctacata 25663139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 32269840 - 32269899
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttct 156  Q
    |||||||||||||||||| || | ||||||||| ||| ||  ||||||||||||||||||    
T  32269840 ttttataccatttgcttttgatactttcgatttcctagcactagaggttgttgaccttct 32269899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 23423920 - 23423978
Alignment:
Q  103 accatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||| |||| |||| | || ||||||||| | |||||||||||||||||||    
T  23423920 accatttgcttttgacactttcaacttcctaacatcaaatgttgttgaccttctacata 23423978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 48; Significance: 7e-18; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 33317 - 33250
Alignment:
Q  94 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||||||| |||| |||||||||| ||| |||||| ||||||||||||||||||||||||    
T  33317 tgtttttataccatttacttttgacattttcggtttcctaacaccagaggttgttgaccttctacata 33250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 4e-16; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 50483239 - 50483303
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    ||||||||||||||||||||||| ||||| ||| ||| || ||||||||||||||||||||||||    
T  50483239 ttttataccatttgctttcgacactttcggtttcctagcaccagaggttgttgaccttctacata 50483303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 600735 - 600799
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||||||||| | || ||||| ||| |||||| ||||||||||||||||||||||||    
T  600735 ttttataccatttgcttttgtcactttcggtttcctaacaccagaggttgttgaccttctacata 600799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 182
Target Start/End: Original strand, 56462146 - 56462233
Alignment:
Q  94 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcat 182  Q
    ||||||||||||||||| ||| |||| ||| | ||| ||| || ||||||||||||||||||||||| | |||| ||||||||||||||    
T  56462146 tgtttttataccatttgttttagacacttttggtttcctagcaccagaggttgttgaccttctacat-agagttcaaaggatcatgcat 56462233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 34107736 - 34107803
Alignment:
Q  94 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    ||||||||||||||||| ||| |||| ||||||||| ||| || |||||| |||||||||||||||||    
T  34107736 tgtttttataccatttgtttttgacactttcgatttcctagcaccagaggctgttgaccttctacata 34107803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 747811 - 747897
Alignment:
Q  96 tttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 183  Q
    ||||||||||||||||||| || ||||  | |||  ||| ||||||||||||||||||||||||| | |||||||| | |||||||||    
T  747811 tttttataccatttgcttttgatatttctggtttcttaatatcagaggttgttgaccttctacat-agagtttaaaaggtcatgcata 747897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 181
Target Start/End: Original strand, 46391355 - 46391440
Alignment:
Q  94 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgca 181  Q
    ||||||||||||||| ||||   ||||||||||||| ||| ||  |||||||||||||||||||||||| |||| ||| |||||||||    
T  46391355 tgtttttataccatt-gcttgtaacattttcgatttcctatcagtagaggttgttgaccttctacataa-agttcaaaagatcatgca 46391440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 55933505 - 55933567
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||||||||| |||| |||||| || ||| ||||  |||||||||||||||||||||    
T  55933505 ttttataccatttgcttttgacactttcgacttcctagcatc--aggttgttgaccttctacata 55933567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 712635 - 712721
Alignment:
Q  96 tttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 183  Q
    ||||||||||||||||||| || ||||  | |||  ||| |||||||||||||| |||||||||| | |||||||| | |||||||||    
T  712635 tttttataccatttgcttttgatatttctggtttcttaatatcagaggttgttgtccttctacat-agagtttaaaaggtcatgcata 712721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 7536611 - 7536678
Alignment:
Q  94 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    ||||||||||| ||||| ||| |||| ||||  ||| ||| || ||||||||||||||||||||||||    
T  7536611 tgtttttatacaatttgtttttgacaatttcagtttcctagcaccagaggttgttgaccttctacata 7536678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 11562962 - 11562899
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacat 160  Q
    ||||||| ||||| |||| |||||||||| ||||||||||   ||||||||||| |||||||||    
T  11562962 ttttatatcatttactttagacattttcggttttctaacactcgaggttgttgatcttctacat 11562899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 4e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 54508424 - 54508492
Alignment:
Q  94 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataa 162  Q
    |||||||||| |||||||||| |||||||| ||||||||| || ||||||||||||||||||| |||||    
T  54508424 tgtttttatatcatttgcttttgacatttttgattttctagcaccagaggttgttgaccttctgcataa 54508492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 25325096 - 25325008
Alignment:
Q  94 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 183  Q
    |||||||||||||||||||||| ||| ||||||||| ||| || || || ||||||||||||||||| | |||| ||| |||||||||||    
T  25325096 tgtttttataccatttgctttcaacactttcgatttcctagcaccatagattgttgaccttctacat-agagttcaaatgatcatgcata 25325008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 51234680 - 51234616
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||||  ||| |||| |||||| |||||| |||||||||||||||||||||||||||    
T  51234680 ttttataccatttatttttgacactttcgactttctagcatcagaggttgttgaccttctacata 51234616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 53785773 - 53785709
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||||||||| |||| ||||| ||| ||| || ||||||||||||||||||||||||    
T  53785773 ttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttgaccttctacata 53785709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 7900922 - 7900858
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||||| ||| |||| |||||  || ||| |||||||||||||||||||||||||||    
T  7900922 ttttataccatttgtttttgacactttcggcttcctagcatcagaggttgttgaccttctacata 7900858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 52741555 - 52741619
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||||||||| |||| ||| | ||| ||| || ||||||||||||||||||||||||    
T  52741555 ttttataccatttgcttttgacacttttggtttcctagcaccagaggttgttgaccttctacata 52741619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 7502054 - 7502117
Alignment:
Q  96 tttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctaca 159  Q
    |||||||||||||| |||| |||||||| | ||| ||| || ||||||||||||||||||||||    
T  7502054 tttttataccattttcttttgacatttttggtttcctagcaccagaggttgttgaccttctaca 7502117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 39583272 - 39583357
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 183  Q
    ||||||| |||||| |||||||| ||||| ||| ||| ||||| |||||||||||||||| ||| | |||| ||||| |||||||||    
T  39583272 ttttatatcatttgttttcgacactttcggtttcctagcatcataggttgttgaccttctgcat-agagttcaaagggtcatgcata 39583357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 44198831 - 44198767
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||||||||| |||| ||||| |||  ||||| | |||| |||||||||||||||||    
T  44198831 ttttataccatttgcttttgacactttcggtttcttaacacccgaggctgttgaccttctacata 44198767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 37133039 - 37133106
Alignment:
Q  94 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    ||||||||||||||||| |||  ||| ||||| |||  || || ||||||||||||||||||||||||    
T  37133039 tgtttttataccatttgttttttacactttcggtttcttagcaccagaggttgttgaccttctacata 37133106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 22198053 - 22197986
Alignment:
Q  94 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    ||||||||||||||||||||| | || ||||| ||| ||| |||||||||||||||||||||||||||    
T  22198053 tgtttttataccatttgcttttgtcactttcggtttcctagcatcagaggttgttgaccttctacata 22197986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 22239768 - 22239835
Alignment:
Q  94 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    ||||||||||||||||||||| | || ||||| ||| ||| |||||||||||||||||||||||||||    
T  22239768 tgtttttataccatttgcttttgtcactttcggtttcctagcatcagaggttgttgaccttctacata 22239835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 6635005 - 6635067
Alignment:
Q  96 tttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctac 158  Q
    |||||||| |||||||||| |||| |||||||||| || ||||||||||||||||||||||||    
T  6635005 tttttatatcatttgcttttgacagtttcgattttttagcatcagaggttgttgaccttctac 6635067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 19277357 - 19277293
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||||||||| |||| ||||| ||| ||| || ||||||||||||||||||||||||    
T  19277357 ttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttgaccttctacata 19277293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 43856937 - 43856874
Alignment:
Q  98 tttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    ||||||| ||||||||| |||||||| | ||| |||||| ||||||||||||||||||||||||    
T  43856937 tttatacaatttgcttttgacatttttggtttcctaacaccagaggttgttgaccttctacata 43856874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 5972261 - 5972323
Alignment:
Q  99 ttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||| ||| |||||||||  |||||||  ||||||||||||||||||||||||||    
T  5972261 ttataccatttgtttttgacattttcatttttctagtatcagaggttgttgaccttctacata 5972323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 30216098 - 30216186
Alignment:
Q  94 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 183  Q
    ||||||||||||||||||||| |||| ||||| ||| ||| |||||||| ||||||| |||| |||||| |||| ||| | |||||||||    
T  30216098 tgtttttataccatttgcttttgacactttcggtttcctagcatcagagtttgttgatcttccacataa-agttcaaatggtcatgcata 30216186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 983013 - 982949
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||||||||| || | ||||| ||||||| || |||||||||||| |||||||||||    
T  983013 ttttataccatttgcttttgatactttcggttttctagcaccagaggttgttggccttctacata 982949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 21326881 - 21326945
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||||||||| |||| ||||||||| ||| || |||||| |||||||||| ||||||    
T  21326881 ttttataccatttgcttttgacactttcgatttcctagcaccagaggctgttgaccttttacata 21326945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 40726520 - 40726587
Alignment:
Q  94 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    ||||||||||||||||| ||| |||| |||||  ||  || |||||||||||||||||||||||||||    
T  40726520 tgtttttataccatttgtttttgacactttcggcttcatagcatcagaggttgttgaccttctacata 40726587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 34772848 - 34772781
Alignment:
Q  94 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataa 162  Q
    ||||||||||||||||||||| || | |||| |||| || | || ||||||||||||||||||||||||    
T  34772848 tgtttttataccatttgcttttgaaactttcaattt-cttagattagaggttgttgaccttctacataa 34772781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 157
Target Start/End: Complemental strand, 47679189 - 47679129
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttcta 157  Q
    |||||||| |||||| || |||||||||| ||| ||| ||||| |||||||||||||||||    
T  47679189 ttttatactatttgcgtttgacattttcggtttcctagcatcacaggttgttgaccttcta 47679129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 48539245 - 48539181
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||||||||| |||| ||||| ||||||| || |||||| |||||| | ||||||||    
T  48539245 ttttataccatttgcttttgacactttcggttttctagcaccagaggctgttgatcgtctacata 48539181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 5825340 - 5825273
Alignment:
Q  94 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||||||| |||| |||| |||||   | ||| || ||||||||||||||||||||||||    
T  5825340 tgtttttataccatttacttttgacactttcggcatcctagcaccagaggttgttgaccttctacata 5825273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 27521534 - 27521471
Alignment:
Q  98 tttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    ||||||| |||| |||| |||| ||| | ||| ||| |||||||||||||||||||||||||||    
T  27521534 tttatacaatttacttttgacacttttggtttcctagcatcagaggttgttgaccttctacata 27521471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 28517327 - 28517394
Alignment:
Q  94 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    ||||||||||||||||||||| |||| ||| || || ||| ||||||||   ||||||||||||||||    
T  28517327 tgtttttataccatttgcttttgacacttttgacttcctagcatcagagacagttgaccttctacata 28517394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 42295224 - 42295291
Alignment:
Q  94 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    ||||||||||||||||| |||  | | ||||| ||| |||||| ||| ||||||||||||||||||||    
T  42295224 tgtttttataccatttgttttttatactttcggtttcctaacaccaggggttgttgaccttctacata 42295291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 18744997 - 18745082
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 183  Q
    |||||||||||||||||| |||||||||||||||||| || || ||| ||||| |||||||||| | |||| ||| |||||||||||    
T  18744997 ttttataccatttgcttttgacattttcgattttctagcaccataggctgttggccttctacat-agagttcaaaagatcatgcata 18745082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 4413109 - 4413173
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||||||||| |||| ||||| ||| ||| || ||||| ||||||||||||||||||    
T  4413109 ttttataccatttgcttttgacactttcggtttcctagcaccagagattgttgaccttctacata 4413173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 28225064 - 28225000
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||||||||| |||| |||||  || ||| | |||||||||||||||||||||||||    
T  28225064 ttttataccatttgcttttgacactttcggcttcctagcttcagaggttgttgaccttctacata 28225000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 13147142 - 13147207
Alignment:
Q  96 tttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    ||||||||||||||| ||| |||| ||| | |||||||||| ||||| ||||||||||||| ||||    
T  13147142 tttttataccatttgattttgacacttttggttttctaacaccagagattgttgaccttcttcata 13147207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 20142768 - 20142832
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    ||||||||||||| |||| |||| ||| | ||||||| ||||| |||||||||||||| ||||||    
T  20142768 ttttataccattttcttttgacacttttggttttctagcatcaaaggttgttgaccttatacata 20142832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 34814862 - 34814925
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    ||||||||||||||||||||||| |||||  || |||||| |||||  |||||||||||||||||    
T  34814862 ttttataccatttgctttcgacactttcg-gttcctaacaccagagactgttgaccttctacata 34814925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 41867951 - 41868015
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||||||||| |||| |||||  || ||| || |||||| |||||||||||||||||    
T  41867951 ttttataccatttgcttttgacactttcgggttcctagcaccagaggctgttgaccttctacata 41868015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 7760918 - 7760970
Alignment:
Q  127 ttttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgc 180  Q
    ||||||| || ||||||||||||||||||||||| | |||| ||||||||||||    
T  7760918 ttttctatcaccagaggttgttgaccttctacat-agagttcaaaggatcatgc 7760970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 2898768 - 2898681
Alignment:
Q  95 gtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 183  Q
    |||||||||||||||||||| || | ||||| ||| ||| || ||||||||||||||||||||||| | |||| ||| |||||||||||    
T  2898768 gtttttataccatttgcttttgatactttcggtttcctagcaccagaggttgttgaccttctacat-agagttcaaaagatcatgcata 2898681  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 4862032 - 4862117
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 183  Q
    |||||||| ||||||||| |||| ||||||||| |||||| || | |||||||||||||||||| | |||| ||||| |||||||||    
T  4862032 ttttatacaatttgcttttgacactttcgatttcctaacaccaaaagttgttgaccttctacat-agagttcaaagggtcatgcata 4862117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 29169836 - 29169900
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||||||||| |||| ||||| ||| ||| || ||||||||||| ||||||||||||    
T  29169836 ttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttaaccttctacata 29169900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 34644630 - 34644566
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||||| ||| |||| |||||  || ||| |||||||||||||||||||||||||||    
T  34644630 ttttataccatttgtttttgacactttcggcttcctagcatcagaggttgttgaccttctacata 34644566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 45659691 - 45659751
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttcta 157  Q
    |||||||||||||||||| |||| ||||||||| ||| || |||||| |||||||||||||    
T  45659691 ttttataccatttgcttttgacactttcgatttcctatcaccagaggctgttgaccttcta 45659751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 28041168 - 28041234
Alignment:
Q  95 gtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||||||||||| |||| ||||| ||| ||| || ||||||  ||||||||||||||||    
T  28041168 gtttttataccatttgcttttgacactttcggtttcctagcaccagaggcggttgaccttctacata 28041234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 24177553 - 24177618
Alignment:
Q  96 tttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    ||||||||||||||| ||| |||| ||||| ||| ||| ||||||||| |||| ||||||||||||    
T  24177553 tttttataccatttgtttttgacagtttcggtttcctagcatcagaggctgtttaccttctacata 24177618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 31737366 - 31737430
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||||| ||| |||| ||||||||||||| ||| ||||| | ||||| |||||||||    
T  31737366 ttttataccatttgtttttgacactttcgattttctagcattagaggctattgacattctacata 31737430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 21473070 - 21473003
Alignment:
Q  94 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    ||||||||||||||||||||| |||| || |  ||| ||| || |||||| |||||||||||||||||    
T  21473070 tgtttttataccatttgcttttgacacttgcagtttcctagcaccagaggctgttgaccttctacata 21473003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 2764543 - 2764478
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataa 162  Q
    |||||| |||||| |||| |||| ||||   || ||| ||||||||||||||||||||||||||||    
T  2764543 ttttatgccattttcttttgacactttcagcttcctagcatcagaggttgttgaccttctacataa 2764478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 22346958 - 22346897
Alignment:
Q  98 tttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctaca 159  Q
    |||||||| |||||||| |||| ||||| ||| |||  | ||||||||||||||||||||||    
T  22346958 tttataccttttgcttttgacactttcggtttcctagtagcagaggttgttgaccttctaca 22346897  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 24125092 - 24125007
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 183  Q
    |||||||||||||||||| |||| ||| ||||| ||| || |||||||||||| |||||||||||| |||| ||| | |||||||||    
T  24125092 ttttataccatttgcttttgacaattttgatttcctagcaccagaggttgttggccttctacataa-agttcaaaaggtcatgcata 24125007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 8115875 - 8115792
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcat 182  Q
    ||||||||||||||| || |||| ||| | |||| ||| || |||||||||||||||||||||||| |||| ||||||||||||||    
T  8115875 ttttataccatttgcatttgacacttttggttttttaa-atgagaggttgttgaccttctacataa-agttcaaaggatcatgcat 8115792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 164
Target Start/End: Original strand, 8540417 - 8540487
Alignment:
Q  94 tgtttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataata 164  Q
    |||||||||  ||| ||| || |||| |||| | |||||||||||||||||||||||| ||||||||||||    
T  8540417 tgtttttatgtcatctgcatttgacactttcaactttctaacatcagaggttgttgactttctacataata 8540487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 3188033 - 3187969
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||||||||| || | |||||  || ||| |||||||||||||| ||||||||||||    
T  3188033 ttttataccatttgcttttgaaactttcggcttcctagcatcagaggttgttaaccttctacata 3187969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 38815358 - 38815273
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 183  Q
    |||||||||||||||||| |||| ||||   || ||| || |||||| |||||||||||||||| | |||| ||||| |||||||||    
T  38815358 ttttataccatttgcttttgacactttccgcttcctagcaccagagggtgttgaccttctacat-agagttcaaagggtcatgcata 38815273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 959643 - 959583
Alignment:
Q  98 tttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctac 158  Q
    ||||||||||||| ||| |||||||||| ||| ||| || |||||||||||||||||||||    
T  959643 tttataccatttgtttttgacattttcggtttcctagcaccagaggttgttgaccttctac 959583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 33220754 - 33220818
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    |||||||||||||||||| |||| |||||  || ||| |||| ||||||||||||||||||||||    
T  33220754 ttttataccatttgcttttgacactttcggcttcctagcatccgaggttgttgaccttctacata 33220818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 182
Target Start/End: Original strand, 4165965 - 4166049
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcat 182  Q
    ||||||| |||||||||| |||| |||||  || ||| || ||||||||||||||||||||||| | |||||||| | ||||||||    
T  4165965 ttttatatcatttgcttttgacactttcgggttcctagcaccagaggttgttgaccttctacat-agagtttaaaaggtcatgcat 4166049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 4206639 - 4206703
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    ||||||| |||||||||| |||| |||||  || ||| || ||||||||||||||||||||||||    
T  4206639 ttttatatcatttgcttttgacactttcgggttcctagcaccagaggttgttgaccttctacata 4206703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 28625995 - 28625909
Alignment:
Q  96 tttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacataatagtttaaaggatcatgcata 183  Q
    ||||||||||||||| |||  ||| |||| |||| ||| || ||||||||||||| ||||||||||| |||| ||| | |||||||||    
T  28625995 tttttataccatttgttttttacactttcaatttcctagcaccagaggttgttgagcttctacataa-agttcaaaaggtcatgcata 28625909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 13398224 - 13398289
Alignment:
Q  96 tttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    ||||||||| |||| |||| || ||||| || || ||||||||||| ||||||||| |||||||||    
T  13398224 tttttatactatttacttttgatatttttgacttcctaacatcagaagttgttgacattctacata 13398289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 103170 - 103107
Alignment:
Q  97 ttttataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacat 160  Q
    |||||||||||||||||| |||| ||||| ||| ||| || |||||| ||||||||||||||||    
T  103170 ttttataccatttgcttttgacactttcggtttcctagcaccagaggctgttgaccttctacat 103107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 6395 - 6334
Alignment:
Q  100 tataccatttgctttcgacattttcgattttctaacatcagaggttgttgaccttctacata 161  Q
    ||||||||||||||| |||| ||||  ||| ||| || |||||| |||||||||||||||||    
T  6395 tataccatttgcttttgacactttcagtttcctagcaccagaggctgttgaccttctacata 6334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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