View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3436-Insertion-5 (Length: 991)
Name: NF3436-Insertion-5
Description: NF3436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3436-Insertion-5 |
 | |
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| [»] chr6 (4 HSPs) |
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| [»] scaffold0176 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 504; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 362 - 939
Target Start/End: Complemental strand, 38324542 - 38323968
Alignment:
| Q |
362 |
gccaccaaaaatgaaaatgcttgactgaaatagcaaaaaacaccgtttttcaattnnnnnnnnggcagcaaagaaacttacattgatacagaagaagtgt |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38324542 |
gccaccaaaaatgaaaatgcttgactgaaatagcaaaaaacaccgtttttcaattaaaaaaaaggcagcaaagaaacttacattgatacagaagaagtgt |
38324443 |
T |
|
| Q |
462 |
gtgattaatctgatgcctgcaaagtttccctctctcagaggggagccaaggctgcatttgagtgcacttcttaacacttgtaacaccgatattttaaact |
561 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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|
| T |
38324442 |
gtgattaatctgatgcctgcaaagtttccctctctcagaggggagccaaggctgcatttgagtgcacttatttacacttgtaacaccgatattttaaact |
38324343 |
T |
|
| Q |
562 |
gaaggcgtgtccaacaatgttgggcactcaaaattcgtgtttggtgtccatttctgtccttcataagacataccagtctacacaagtttctgatctccgc |
661 |
Q |
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|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38324342 |
gaaggtgtgtccaacaatgttgggcactcaaaattcgtgtttggtgtccatttctgtccttcataagacataacagtctacacaagtttctgatctccgc |
38324243 |
T |
|
| Q |
662 |
aacagcaatacaccttttctcttaaaaaatcaaaactttaccaaattggatacacattccattgcccgccttatcagtaacctccaaccacatagaagca |
761 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
38324242 |
aacagcaatacaccttttctcttaaaaaatcaaaactttaccaaattggatacacattccattgcccgccttatcagtaacctccaaccacagagaagca |
38324143 |
T |
|
| Q |
762 |
acaacacttgtttccaataaacagaacaatcaatttaaagtttttaacaaccgataaaatgaccaactgattacaaaaagttttttaaattttactattc |
861 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38324142 |
acaacacttgtttccaataaacagaacaatcaatttaaagtttttaacaaccgataaaatgaccaactgattacaaaaagttttttaaattttactattc |
38324043 |
T |
|
| Q |
862 |
cggtcaaaccaacgacaaccaccatgggagcccttagtccaacgtccggcacctatataaaatttgtcgtgagaactg |
939 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||| ||| |||||||||||||||||||| ||||||||| |
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|
| T |
38324042 |
cggtcaaaccaacgaca---accatcggagcccttagtccaacttccagcacctatataaaatttgtcatgagaactg |
38323968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 8 - 363
Target Start/End: Complemental strand, 38325639 - 38325284
Alignment:
| Q |
8 |
cggacagcagggcagcattttcccgtttgctttgagcactgattacattcctgacgaatataaataaaacttttaaacaggtatacgccaaagaaaaatc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
38325639 |
cggacagcagggcagcattttcccgtttgctttgagcactgattacattcctgacgaatataaatacaacttttaaacaggtatacgccaaagaaaaatc |
38325540 |
T |
|
| Q |
108 |
gttttgaaattgaatcaaagggattacatgccaaaaaattgaatacagtttaacctagtgaattcaaacataattgtatgaaaataacttggatagaaat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
38325539 |
attttgaaattgaatcaaagggattacatgccaaaaaattgaatacagtttaacctagtgaattcaaacataattgtatgaaaataacttcgattgaaat |
38325440 |
T |
|
| Q |
208 |
aaaactcaatcacataggaagagagcaacagaggatactatagctacttattcattgaattttcttaaatttgtatttgttttagtcattgattactttg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38325439 |
aaaactcaatcacataggaagagagcaacagaggatactatagctacttattcattgaattttcttaaatctgtatttgttttagtcattgattactttg |
38325340 |
T |
|
| Q |
308 |
aagtatattgtattggttaccgtcattgttcttaaacctagccaattagaatttgc |
363 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
38325339 |
aagtatattgtattggttacagtcattgttcttaaacctagccaattagaatttgc |
38325284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 892 - 960
Target Start/End: Original strand, 38169821 - 38169889
Alignment:
| Q |
892 |
cccttagtccaacgtccggcacctatataaaatttgtcgtgagaactgaaagtaattttcttaagcgaa |
960 |
Q |
| |
|
||||||||||| | ||| ||||| |||||||||||||| ||||||| ||||||||||||||||||||| |
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|
| T |
38169821 |
cccttagtccatcttccagcacccatataaaatttgtcaagagaactaaaagtaattttcttaagcgaa |
38169889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 939 - 991
Target Start/End: Complemental strand, 33864503 - 33864451
Alignment:
| Q |
939 |
gaaagtaattttcttaagcgaaatcacactcctcaataggtgagtagctaact |
991 |
Q |
| |
|
|||||| ||||||||||| ||| | ||||||||||||||||||||||||||| |
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|
| T |
33864503 |
gaaagtcattttcttaagggaatttgcactcctcaataggtgagtagctaact |
33864451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 946 - 991
Target Start/End: Complemental strand, 34150904 - 34150859
Alignment:
| Q |
946 |
attttcttaagcgaaatcacactcctcaataggtgagtagctaact |
991 |
Q |
| |
|
||||||||||||||| | |||||||||||| |||||||||||||| |
|
|
| T |
34150904 |
attttcttaagcgaatttgcactcctcaataagtgagtagctaact |
34150859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 946 - 991
Target Start/End: Original strand, 34176220 - 34176265
Alignment:
| Q |
946 |
attttcttaagcgaaatcacactcctcaataggtgagtagctaact |
991 |
Q |
| |
|
||||||||||||||| | |||||||||||| |||||||||||||| |
|
|
| T |
34176220 |
attttcttaagcgaatttgcactcctcaataagtgagtagctaact |
34176265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 922 - 991
Target Start/End: Complemental strand, 45582093 - 45582024
Alignment:
| Q |
922 |
aatttgtcgtgagaactgaaagtaattttcttaagcgaaatcacactcctcaataggtgagtagctaact |
991 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||||||||| | ||| ||||||||| |||| |||| |||| |
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|
| T |
45582093 |
aatttgtcacgaggactgaaagtcattttcttaagcgaatttacattcctcaatatgtgattagccaact |
45582024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 895 - 991
Target Start/End: Original strand, 4161556 - 4161652
Alignment:
| Q |
895 |
ttagtccaacgtccggcacctatataaaatttgtcgtgagaactgaaagtaattttcttaagcgaaatcacactcctcaataggtgagtagctaact |
991 |
Q |
| |
|
|||||||| | | ||||||||||||| |||||||| ||||||||||||||||| ||| |||||| ||||| |||||||||| ||| | ||||||| |
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|
| T |
4161556 |
ttagtccatctttcggcacctatatagaatttgtcacaagaactgaaagtaatttgcttgagcgaattcacattcctcaatagatgactggctaact |
4161652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 895 - 991
Target Start/End: Original strand, 4223176 - 4223272
Alignment:
| Q |
895 |
ttagtccaacgtccggcacctatataaaatttgtcgtgagaactgaaagtaattttcttaagcgaaatcacactcctcaataggtgagtagctaact |
991 |
Q |
| |
|
|||||||| | | ||||||||||||| |||||||| ||||||||||||||||| ||| |||||| ||||| |||||||||| ||| | ||||||| |
|
|
| T |
4223176 |
ttagtccatctttcggcacctatatagaatttgtcacaagaactgaaagtaatttgcttgagcgaattcacattcctcaatagatgactggctaact |
4223272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 939 - 991
Target Start/End: Complemental strand, 25570545 - 25570493
Alignment:
| Q |
939 |
gaaagtaattttcttaagcgaaatcacactcctcaataggtgagtagctaact |
991 |
Q |
| |
|
|||||| ||||||||||||||| | ||||| ||||||||||||||||||||| |
|
|
| T |
25570545 |
gaaagtcattttcttaagcgaatttgcactcttcaataggtgagtagctaact |
25570493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 939 - 991
Target Start/End: Complemental strand, 26105037 - 26104985
Alignment:
| Q |
939 |
gaaagtaattttcttaagcgaaatcacactcctcaataggtgagtagctaact |
991 |
Q |
| |
|
|||||| ||||||||||||||| | ||||| ||||||||||||||||||||| |
|
|
| T |
26105037 |
gaaagtcattttcttaagcgaatttgcactcttcaataggtgagtagctaact |
26104985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 933 - 991
Target Start/End: Original strand, 20615 - 20673
Alignment:
| Q |
933 |
agaactgaaagtaattttcttaagcgaaatcacactcctcaataggtgagtagctaact |
991 |
Q |
| |
|
||||| |||||| ||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
20615 |
agaacggaaagtcattttcttaagcgaatttgcactcctcaataggtgagtagctaact |
20673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 932 - 981
Target Start/End: Original strand, 2220711 - 2220760
Alignment:
| Q |
932 |
gagaactgaaagtaattttcttaagcgaaatcacactcctcaataggtga |
981 |
Q |
| |
|
|||||||||||||||||| ||||| ||| ||||| |||||||||||||| |
|
|
| T |
2220711 |
gagaactgaaagtaatttgtttaagtgaattcacattcctcaataggtga |
2220760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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