View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3436-Insertion-6 (Length: 906)
Name: NF3436-Insertion-6
Description: NF3436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3436-Insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 808; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 808; E-Value: 0
Query Start/End: Original strand, 7 - 838
Target Start/End: Original strand, 6504593 - 6505424
Alignment:
| Q |
7 |
agtttggtagaagtttagccaatccataatccgccaatctaggttcaaactcagcatccaacatcacatttgtaggcttcaaattgaaatgcaaaatctg |
106 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6504593 |
agtttggtagaagtttagccaatccataatctgccaatctaggttcaaactcagcatccaacatcacatttgtaggcttcaaattgaaatgcaaaatctg |
6504692 |
T |
|
| Q |
107 |
aggcacacaagtaaaatgaagatattgaagacctttcaccacaccgacagcaatccttaacctagcttcccaaccaatctgcaactcattttccctcact |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6504693 |
aggcacacaagtaaaatgaagatattgaagacctttcaccacacccacagcaatccttaacctagcttcccaaccaatctgcaactcattttccctcact |
6504792 |
T |
|
| Q |
207 |
ctattcatcacatctgcaagactaccggtcgatacataatcataaaccaacgagaatccatcattttcgcgaacataagcccttaaactcatcaaattcc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6504793 |
ctattcatcacatctgcaagactaccggtcgatacataatcataaaccaacgagaatccatcattttcgcgaacataagcccttaaactcatcaaattcc |
6504892 |
T |
|
| Q |
307 |
tatgtcttaaactagctagaagctctagctccatttgtatttgcctcttcaccgactttttcctactctccggcgaattgctctcaaagggtgttagcct |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6504893 |
tatgtcttaaactagctagaagctctagctccatttgtatttgcctcttcaccgactttttcctactctccggcgaattgctctcaaagggtgttagcct |
6504992 |
T |
|
| Q |
407 |
tttaactgcaattatgagaccattttcaagaacagttttgtagtatttcccatttggactggaaccaagcatatggttttcttttgtcaaagctacttgg |
506 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6504993 |
tttaaccgcaattatgagaccattttcaagaacagttttgtagtatttcccatttggacttgaaccaagcatatggttttcttttgtcaaagctacttgg |
6505092 |
T |
|
| Q |
507 |
agtgtctttgaggcaattttcggagagaatatgaccggtcctttgaggattggtgttcggtttagataccgaacaacacaacgaatcacgaatgcgaaga |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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|
| T |
6505093 |
agtgtctttgaggcaattttcggagagaatatgaccggtcctttgaggattggtgttcggtttagataccaaacaacacaacgaatcacgaatgcaaaga |
6505192 |
T |
|
| Q |
607 |
gaacagaaccaattaatccagtaacagctcctaaaactatgctaataataatcttcctaggatcatccttatactccgatgttgacgatgaaggctcaga |
706 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6505193 |
gaacagaaccaattaatccagtaacagctcctaaaactatgctaataataatcttcctaggatcatccttatactccgatgttgacgatgaaggctcaga |
6505292 |
T |
|
| Q |
707 |
agacatgtgcttactcaatcttccttggcattgcacagtgtcatgatgcaaactaaacaagaacagaagaagaacaaatggctgaaaagacaaaaatttc |
806 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6505293 |
agacatgtgcttactcaatcttccttggcattgcacagtgtcatgatgcaaactaaacaagaacagaagaagaacaaatggctgaaaagacaaaaatttc |
6505392 |
T |
|
| Q |
807 |
cttgcaagagaaaaaggagtgtgtcttttctt |
838 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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|
| T |
6505393 |
cttgcaagagaaaaaggagtgtgtcttttctt |
6505424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 324 - 448
Target Start/End: Original strand, 34059485 - 34059609
Alignment:
| Q |
324 |
agaagctctagctccatttgtatttgcctcttcaccgactttttcctactctccggcgaattgctctcaaagggtgttagccttttaactgcaattatga |
423 |
Q |
| |
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|||||||||||||| || ||| |||||||| ||| || ||| | |||||||| | ||||| |||||||||||||||| |||||| | ||||||| | | |
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| T |
34059485 |
agaagctctagctcaatctgtcattgcctctacactgattttcgcttactctccagtgaatttctctcaaagggtgttaaccttttgagtgcaattgtta |
34059584 |
T |
|
| Q |
424 |
gaccattttcaagaacagttttgta |
448 |
Q |
| |
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|||| ||| ||||||||||||||| |
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|
| T |
34059585 |
taccaattttaagaacagttttgta |
34059609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 53123378 - 53123426
Alignment:
| Q |
96 |
tgcaaaatctgaggcacacaagtaaaatgaagatattgaagacctttca |
144 |
Q |
| |
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||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
53123378 |
tgcaaaatctgaggcacacaagtgaaatgaaaatattgaagacctttca |
53123426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 468 - 526
Target Start/End: Original strand, 53123575 - 53123633
Alignment:
| Q |
468 |
gaaccaagcatatggttttcttttgtcaaagctacttggagtgtctttgaggcaatttt |
526 |
Q |
| |
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|||||||||| ||||||||| ||||| |||||| ||| |||||||||||||||||||| |
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| T |
53123575 |
gaaccaagcaaatggttttcgtttgttaaagctgtttgcagtgtctttgaggcaatttt |
53123633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 681
Target Start/End: Original strand, 53123643 - 53123756
Alignment:
| Q |
569 |
tagataccgaacaacacaacgaatcacgaatgcgaa-gagaacagaaccaattaatccagtaacagctcctaaaactatgctaataataatcttcctagg |
667 |
Q |
| |
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||||||| ||||| ||||||||| ||| |||| ||| || ||||||||||||| |||||| || | ||||||||||||||| | ||| ||||||| ||| |
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| T |
53123643 |
tagatactgaacagcacaacgaaccaccaatgtgaaagattacagaaccaattagtccagtgactgttcctaaaactatgctgagaatgatcttcccagg |
53123742 |
T |
|
| Q |
668 |
atcatccttatact |
681 |
Q |
| |
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| || |||| |||| |
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|
| T |
53123743 |
accaaccttgtact |
53123756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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