View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3436-Insertion-7 (Length: 900)

Name: NF3436-Insertion-7
Description: NF3436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3436-Insertion-7
NF3436-Insertion-7
[»] chr8 (4 HSPs)
chr8 (199-764)||(32142579-32143144)
chr8 (8-179)||(32143186-32143357)
chr8 (792-897)||(32142446-32142551)
chr8 (197-250)||(10075599-10075652)
[»] chr7 (3 HSPs)
chr7 (8-67)||(12095124-12095183)
chr7 (202-250)||(31338482-31338530)
chr7 (202-254)||(44821933-44821985)
[»] chr1 (2 HSPs)
chr1 (202-250)||(4548695-4548743)
chr1 (202-249)||(7273988-7274035)
[»] chr6 (1 HSPs)
chr6 (199-256)||(18264300-18264357)
[»] chr5 (1 HSPs)
chr5 (204-250)||(16889711-16889757)
[»] chr3 (1 HSPs)
chr3 (196-233)||(31713956-31713993)


Alignment Details
Target: chr8 (Bit Score: 534; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 199 - 764
Target Start/End: Complemental strand, 32143144 - 32142579
Alignment:
Q  199 aagtaaagtcaaactgtttttatacaagttataagccgttttcataaactattctgaaatctgtttatgaacatgtctctctcaaagagttcgataagtg 298  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  32143144 aagttaagtcaaactgtttttatacaagttataagcggttttcataaactatcctgaaaactgtttatgaacatgtctctctcaaagagttcgataagtg 32143045  T
Q  299 ttaatgcaagtcaatctaaacggtatctaagaatagacgagattagattatgttacatttttggacgtcgaaaaattggagggctaattgaagagaagag 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32143044 ttaatgcaagtcaatctaaacggtatctaagaatagacgagattagattatgttacatttttggacgtcgaaaaattggagggctaattgaagagaagag 32142945  T
Q  399 gcatattttggaacgatgtcgtagggttgggatgaatgagattgagagtgatgatgatgaaagttagttagtatagtaaaaacaccggcacctactacaa 498  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32142944 gcatattttggaacgatgtcgtagggttgagatgaatgagattgagagcgatgatgatgaaagttaattagtatagtaaaaacaccggcacctactacaa 32142845  T
Q  499 ggatcgctacgatggaaactgttaaccaccaaaacaagtcactcccatattgttttctgtctgtctcaccatcatcaccaacctttagttccatgtgatt 598  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32142844 ggatcgctacgatggaaactgttaaccaccaaaacaagtcactcccatattgttttctgtctgtctcaccatcatcaccaacctttagttccatgtgatt 32142745  T
Q  599 ctcagtgagtaacttgaaaatgataagtcataaatggtgatttgaatttgaaggtgcaaggaattggaaaatggtggaaagtgagacaaatgaggaggtc 698  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32142744 ctcagtgagtaacttgaaaatgataagtcataaatggtgatttgaatttgaaggtgcaaggaattggaaaatggtggaaagtgagacaaatgaggaggtc 32142645  T
Q  699 atgttactcgttattatattaattgagaaacttctacagattaaaacagaatcgaaagtagatttg 764  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32142644 atgttactagttattatattaattgagaaacttctacagattaaaacagaatcgaaagtagatttg 32142579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 32143357 - 32143186
Alignment:
Q  8 tttctgttattctcattcaataacagaaagtatattcaataaaatttataaggtcgaaaattttcattcattttttgcaaatgtttagcaaactattaga 107  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32143357 tttctgttatactcatccaataacagaaagtatattcaataaaatttataccgtcgaaaattttcattcattttttgcaaatgtttagcaaactattaga 32143258  T
Q  108 cactcgattccaaattctctttcaataacaacttaattaaacgcttgaaggataaccactcatgatataagt 179  Q
      |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  32143257 tgctcgattccaaattctctttcaataacaacttaattaaacgcttaaaggataagcactcatgatataagt 32143186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 792 - 897
Target Start/End: Complemental strand, 32142551 - 32142446
Alignment:
Q  792 tgtgaacgaagctaagatttttcttgagaaggaatatatgtgagtgagtaatgctaaggtttagtgattttatttttcagtttgtcaataaaatattaca 891  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32142551 tgtgaaagaagctaagatttttcttgagaaggaatatatgtgagtgagtaatgctaaggtttagtgattttatttttcagtttgtcaataaaatattaca 32142452  T
Q  892 tgtaaa 897  Q
    ||||||    
T  32142451 tgtaaa 32142446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 10075652 - 10075599
Alignment:
Q  197 ataagtaaagtcaaactgtttttatacaagttataagccgttttcataaactat 250  Q
    |||| |||||||||||| |||||||| |||||||||||  ||||||||| ||||    
T  10075652 ataattaaagtcaaactatttttatataagttataagctattttcataagctat 10075599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 6e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 12095183 - 12095124
Alignment:
Q  8 tttctgttattctcattcaataacagaaagtatattcaataaaatttataaggtcgaaaa 67  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  12095183 tttctgttatactcattcaataacagaaagtatattcaataaattttataacgtcgaaaa 12095124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 31338482 - 31338530
Alignment:
Q  202 taaagtcaaactgtttttatacaagttataagccgttttcataaactat 250  Q
    ||||||||||||||||||||| ||||||||||  |||| ||||||||||    
T  31338482 taaagtcaaactgtttttatataagttataagttgtttccataaactat 31338530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 44821933 - 44821985
Alignment:
Q  202 taaagtcaaactgtttttatacaagttataagccgttttcataaactattctg 254  Q
    |||||||||| ||||||| || ||||||||||| |||||||||| ||||||||    
T  44821933 taaagtcaaattgtttttgtataagttataagctgttttcataagctattctg 44821985  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 4548695 - 4548743
Alignment:
Q  202 taaagtcaaactgtttttatacaagttataagccgttttcataaactat 250  Q
    |||||||||||||||||||||||||| |||||| |||||||||| ||||    
T  4548695 taaagtcaaactgtttttatacaagtcataagctgttttcataagctat 4548743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 249
Target Start/End: Complemental strand, 7274035 - 7273988
Alignment:
Q  202 taaagtcaaactgtttttatacaagttataagccgttttcataaacta 249  Q
    |||||||||| |||||| ||||||||||||||| |||| |||||||||    
T  7274035 taaagtcaaattgttttcatacaagttataagctgtttccataaacta 7273988  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 18264300 - 18264357
Alignment:
Q  199 aagtaaagtcaaactgtttttatacaagttataagccgttttcataaactattctgaa 256  Q
    ||||||||||||| |||||| |||||||||||||||  ||||| |||||||| |||||    
T  18264300 aagtaaagtcaaattgttttcatacaagttataagctattttcttaaactatcctgaa 18264357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 16889711 - 16889757
Alignment:
Q  204 aagtcaaactgtttttatacaagttataagccgttttcataaactat 250  Q
    ||||||||||||||||||| ||| ||||||| |||||||||| ||||    
T  16889711 aagtcaaactgtttttatagaagctataagctgttttcataagctat 16889757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 31713956 - 31713993
Alignment:
Q  196 gataagtaaagtcaaactgtttttatacaagttataag 233  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  31713956 gataaataaagtcaaactgttttgatacaagttataag 31713993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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