View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3436-Insertion-9 (Length: 811)

Name: NF3436-Insertion-9
Description: NF3436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3436-Insertion-9
NF3436-Insertion-9
[»] chr5 (2 HSPs)
chr5 (194-805)||(3815844-3816455)
chr5 (5-162)||(3816453-3816609)


Alignment Details
Target: chr5 (Bit Score: 584; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 194 - 805
Target Start/End: Complemental strand, 3816455 - 3815844
Alignment:
Q  194 taaccgtggtagatttctacttcgaagtgcgactctattttggttgaaattttgagctattttcaatagtccatcttcaaataacacttggcaattgcct 293  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3816455 taaccgtggtagatttctacttcaaagtgcgactctattttggttgaaattttgagctattttcaatagtccatcttcaaataacacttggcaattgcct 3816356  T
Q  294 tattttaatgtccatttacgcatctcaatgttttggattgctcttgatgaatttttagtttcctgacacaaaagtgcagtgtgacagagaaataaaaagg 393  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3816355 tagtttaatgtccatttacgcatctcaatgttttggattgctcttgatgaattttgagtttcctgacacaaaagtgcagtgtgacagagaaataaaaagg 3816256  T
Q  394 ttcttttcttttcttaacttcaactttaacgaacccattagtaaggtaatgttgccaaaattgagataaataaactactaaaattcgtgttatcataata 493  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3816255 ttcttttcttttcttaacttcaactttaacgaacccattagtaaggtaatgttgccaaaattgagataaataaactactagaattcgtgttatcataata 3816156  T
Q  494 agtaataatgaatcataccttgtacatggatcttccatttccaaaaatgaaatcaatggagccctcaatgtagcattccttgaagtaatgcctaccagca 593  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3816155 agtaataatgaatcataccttgtacatggatcttccatttccaaaaatgaaatcaatggagccctcaatgtagcattccttgaagtaatgcctaccagca 3816056  T
Q  594 tcgtcgcaaagtgtgtcttgtgcaccatggaagccacatccggagaagtatgctttgtcccctgatatgcgaaacgccaccgcttgcaatccttgcatcc 693  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3816055 tcgtcgcaaagtgtgtcttgtgcaccatggaagccacatccggagaagtatgctttgtcccctgatatgcgaaacgccaccgcttgcaatccttgcatcc 3815956  T
Q  694 cgggcattggtgccggcgctgtattctgcatgctcaccattcatttcttgctttattagtttcttattctcaactctttgccaaaaatagaatgattatt 793  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  3815955 cgggcattggtgccggcgctgtattctgcatgctcaccattcatttcttgctttattagtttcttattctcaactctttgccaaaaagggaatgattatt 3815856  T
Q  794 caacaaattttt 805  Q
    |||||| |||||    
T  3815855 caacaatttttt 3815844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 3816609 - 3816453
Alignment:
Q  5 acatgaatttcagtgtttcttttgaaactatagctttatgtcaattaatgaggtacaagtttcttttgaaactataacaatgtattcttgttcaacnnnn 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  3816609 acatgaatttcagtgtttcttttgaaactatagctttatgtcaattaatgaggtacaagtttcttttgaaactataacaatgtattcttgttcaac-aaa 3816511  T
Q  105 nnnncaacatgaatattagtagtatttgaaaattcaacttaatgttcttttgggataa 162  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3816510 aaaacaacatgaatattagtagtatttgaaaattcaacttaatgttcttttgggataa 3816453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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