View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3436R-Insertion-10 (Length: 335)
Name: NF3436R-Insertion-10
Description: NF3436R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3436R-Insertion-10 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 32709389 - 32709176
Alignment:
| Q |
9 |
ttaacaccaaaatgttgaaacccatgtacacaaaagaacacacatgtcatatggttattattttcaaattttattctctaggtttaagtttagacaatca |
108 |
Q |
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| T |
32709389 |
ttaacaccaaaatgttgaaacccatgtacacaaaagaacacacatgtcatatggttattattttcaaattttattctctaggtttaagtttagacaatca |
32709290 |
T |
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| Q |
109 |
acaaaaaggggaaaaattaatagacaaaaaagatcaaattattatttgtaggaaatcaaacatgcatttggttagtgtaccaaatcttaaacgaaatgaa |
208 |
Q |
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| T |
32709289 |
acaaaaaggggaaaaattaatagacacaaaagatcaaattattatttgtaggaaatcaaacatgcatttggttagtgtaccaaatcttaaacgaaatgaa |
32709190 |
T |
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| Q |
209 |
gaactcccaataat |
222 |
Q |
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|||||||||||||| |
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| T |
32709189 |
gaactcccaataat |
32709176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 251 - 335
Target Start/End: Complemental strand, 32709147 - 32709063
Alignment:
| Q |
251 |
gatgttaggttacatcttagattttgaaatagttaagagaaagcaaaaagtaggaagaaaattagtgatgaaggaaagaaggata |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32709147 |
gatgttaggttacatcttagattttgaaatagttaagagaaagcaaaaagtaggaagaaaattagtgatgaaggaaagaaggata |
32709063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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