View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3436R-Insertion-12 (Length: 232)
Name: NF3436R-Insertion-12
Description: NF3436R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3436R-Insertion-12 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 54 - 225
Target Start/End: Complemental strand, 887467 - 887296
Alignment:
| Q |
54 |
ttcgattagcaagcatatatttcctttactctgaaaattaaggatatatagctagcatgttagaatataattacttaattagaggatcataaaatcaaag |
153 |
Q |
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| T |
887467 |
ttcgaatagcaagcatatatttccttttctctgaaaattaaggatatatagctagcatgttagtatataattacttaattagaggatcataaaatcaaag |
887368 |
T |
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| Q |
154 |
gtagcttaataaaaaggtgctcaccgacagttttatataatgtttaactagtaattcaaacttcacattgtt |
225 |
Q |
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| T |
887367 |
gtagcttcacaaaaaggtgctcaccgagagggttatataatgttcaacttgtaattcaaacttcacattgtt |
887296 |
T |
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Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 31880610 - 31880668
Alignment:
| Q |
118 |
atataattacttaattagaggatcataaaatcaaaggtagcttaataaaaaggtgctca |
176 |
Q |
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| T |
31880610 |
atataattatttaattagaggatcataaaatcaaaggtagcttaataaaaaggtgctca |
31880668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 31900142 - 31900074
Alignment:
| Q |
54 |
ttcgattagcaagcatatatttcctttactctgaaaattaaggatatatagctagcatgttagaatataat |
124 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31900142 |
ttcgattagcaaacatat--ttcctttactctgaaaattaaggatatatagctagcatgttagtatataat |
31900074 |
T |
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