View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3436R-Insertion-13 (Length: 190)
Name: NF3436R-Insertion-13
Description: NF3436R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3436R-Insertion-13 |
 |  |
|
| [»] chr7 (3 HSPs) |
 |  |
|
| [»] scaffold0197 (1 HSPs) |
 |  |  |
|
| [»] chr5 (4 HSPs) |
 |  |
|
Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 3930038 - 3930220
Alignment:
| Q |
8 |
acaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatcttt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3930038 |
acaagatacgcttcagcagcttcttgaagagcagaaacagcactactctgaaatcgaagatcagttttgaaatcctgagcgatttcacgaaccaatcttt |
3930137 |
T |
 |
| Q |
108 |
ggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttcgcgcaatgcgactgttcctggacggaat |
190 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| ||||| || || | |||||||||||||||||||||| |
|
|
| T |
3930138 |
ggaatggaagtttcctaatgagaagttcagtgctcttctgatacttgcggatctcacgaagtgcgactgttcctggacggaat |
3930220 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 3928693 - 3928861
Alignment:
| Q |
15 |
acgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatgg |
114 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||| || |||| |||| ||||||||||||||||||||||||||||||| |||||||||||| ||| || |
|
|
| T |
3928693 |
acgcttcagcgatttcttgaagagcagaaacagcgctgatctggaatcggagatcagttttgaaatcctgagcgatttcatgaaccaatcttttgaaagg |
3928792 |
T |
 |
| Q |
115 |
aagtttcctaatgagaagctcagtgctcttctgatactttcggatttcgcgcaatgcgactgttcctgg |
183 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||| | |||||| |||||||||||||||||||| |
|
|
| T |
3928793 |
aagtttcctaatgagaagctcagtgatcttttgatacttcctgatttcacgcaatgcgactgttcctgg |
3928861 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 21317625 - 21317471
Alignment:
| Q |
8 |
acaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatcttt |
107 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| | | || |
|
|
| T |
21317625 |
acaagataagcttcagccgcttcttgaagagcagaaacagcactgctctggaatctgagatcggttttgaaatcctgagcgatttcacgaacaagacgtt |
21317526 |
T |
 |
| Q |
108 |
ggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttc |
162 |
Q |
| |
|
||||||||||||| || || |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
21317525 |
ggaatggaagttttcttatcagaagctcagtgctcttctggtacttgcggatttc |
21317471 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 13576399 - 13576218
Alignment:
| Q |
8 |
acaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatcttt |
107 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||| || ||||| | |||||| ||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
13576399 |
acaagataagcttcagcagcttcttgaagagcagaaacagcactgctttgaaaacggagatccgttttgaaatcctgagcaatttctcgaaccaatcttt |
13576300 |
T |
 |
| Q |
108 |
ggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttcgcgcaatgcgactgttcctggacggaa |
189 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| || | ||||| ||||| |||||||| |
|
|
| T |
13576299 |
ggaatggaagcttccttatgagaagctcggtgctcttctgatacttgcggatttcacgaagagcgacggttccaggacggaa |
13576218 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 8 - 159
Target Start/End: Original strand, 43479751 - 43479902
Alignment:
| Q |
8 |
acaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatcttt |
107 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
43479751 |
acaagataagcttcagcggcttcttgaagagcagaaacagcgctactctggaacctgagatcagttttgaaatcctgagcgatttccctaaccaatcttt |
43479850 |
T |
 |
| Q |
108 |
ggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggat |
159 |
Q |
| |
|
|||||||||| ||||| ||||||||||| || |||||||||||||| ||||| |
|
|
| T |
43479851 |
ggaatggaagcttcctgatgagaagctcggtactcttctgatacttgcggat |
43479902 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 17 - 159
Target Start/End: Complemental strand, 38799537 - 38799395
Alignment:
| Q |
17 |
gcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaa |
116 |
Q |
| |
|
|||||||||||||||||||| || ||||| || || ||||| ||||| ||||| || |||||||| ||||| ||||||||||| | | ||||||||||| |
|
|
| T |
38799537 |
gcttcagcagcttcttgaagagcggaaactgcgctgctctggaatctcagatctgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaa |
38799438 |
T |
 |
| Q |
117 |
gtttcctaatgagaagctcagtgctcttctgatactttcggat |
159 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38799437 |
gtttacggatgagaagctcagtgctcttctgatacttacggat |
38799395 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 38821980 - 38822122
Alignment:
| Q |
17 |
gcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaa |
116 |
Q |
| |
|
|||||||||||||||||||| || ||||| || || ||||| ||||| ||||| || |||||||| ||||| ||||||||||| | | ||||||||||| |
|
|
| T |
38821980 |
gcttcagcagcttcttgaagagcggaaactgcgctgctctggaatctcagatctgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaa |
38822079 |
T |
 |
| Q |
117 |
gtttcctaatgagaagctcagtgctcttctgatactttcggat |
159 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38822080 |
gtttacggatgagaagctcagtgctcttctgatacttacggat |
38822122 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 7 - 159
Target Start/End: Complemental strand, 25865752 - 25865600
Alignment:
| Q |
7 |
cacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctt |
106 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||| ||||||| |||||||||||| ||||| ||||||||||||||||| ||||||||||| | | |
|
|
| T |
25865752 |
cacaagataagcctcagcagcttcctgaagtgcaagaacagcatgactctgaaatctcagatccgttttgaaatcctgagcaatttcacgaacaagacgc |
25865653 |
T |
 |
| Q |
107 |
tggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggat |
159 |
Q |
| |
|
||||||||||| || | || | ||||||||| |||||||||||||| ||||| |
|
|
| T |
25865652 |
tggaatggaagcttacggatcaaaagctcagtactcttctgatacttacggat |
25865600 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 26592219 - 26592044
Alignment:
| Q |
8 |
acaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatcttt |
107 |
Q |
| |
|
|||||||| || || || |||||||| || || || |||||| |||||||| | |||||| || |||||||||||||| || |||||||| | | | |
|
|
| T |
26592219 |
acaagataagcctccgccgcttcttgcagcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcctgagcaatctcacgaacaagacgct |
26592120 |
T |
 |
| Q |
108 |
ggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttcgcgcaatgcgactgttcctgg |
183 |
Q |
| |
|
|||| |||||||| | ||||||||| || ||||||||||| ||||| ||||| || || | |||||| |||||||| |
|
|
| T |
26592119 |
ggaaaggaagtttgcgaatgagaagttcggtgctcttctggtacttgcggatctcacggagtgcgacggttcctgg |
26592044 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 41943992 - 41943886
Alignment:
| Q |
11 |
agatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttgga |
110 |
Q |
| |
|
||||| ||||| || ||||| ||||||||| ||||||| ||||| ||||||||||| || |||||||| ||||| ||||||||||| | | ||||| |
|
|
| T |
41943992 |
agataagcttctgctgcttcctgaagtgcaagaacagcatggctctggaatctgagatccgtcttgaaatcttgagcaatttcacgaacaagacgttgga |
41943893 |
T |
 |
| Q |
111 |
atggaag |
117 |
Q |
| |
|
||||||| |
|
|
| T |
41943892 |
atggaag |
41943886 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 87; Significance: 6e-42; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 31062 - 30909
Alignment:
| Q |
8 |
acaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatcttt |
107 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||| | | || |
|
|
| T |
31062 |
acaagataagcttcagcagcttcttgaagagcagaaacagcactgctctggaatctgagataggttttgaaatcctgagcgatttcacgaacaagacgtt |
30963 |
T |
 |
| Q |
108 |
ggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttc |
162 |
Q |
| |
|
||||| ||||||| || || |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
30962 |
ggaat-gaagttttcttatcagaagctcagtgctcttctggtacttgcggatttc |
30909 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 6e-42; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 12531543 - 12531361
Alignment:
| Q |
8 |
acaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatcttt |
107 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||| || || |||| |||||| ||||||||||| ||||||||||||||||| | || | |
|
|
| T |
12531543 |
acaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcggagatctgttttgaaatcttgagcgatttcacgaacaagcctct |
12531444 |
T |
 |
| Q |
108 |
ggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttcgcgcaatgcgactgttcctggacggaat |
190 |
Q |
| |
|
|||||||||| ||||| || |||||||| ||||||||||| ||||| ||||| || || | ||| || ||||||||||||||| |
|
|
| T |
12531443 |
ggaatggaagcttccttataagaagctcggtgctcttctggtacttgcggatctcacgaagtgcaacagttcctggacggaat |
12531361 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 8 - 190
Target Start/End: Original strand, 12547076 - 12547258
Alignment:
| Q |
8 |
acaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatcttt |
107 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||| || || |||| |||||| ||||||||||| ||||||||||||||||| | || | |
|
|
| T |
12547076 |
acaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatcggagatctgttttgaaatcttgagcgatttcacgaacaagcctct |
12547175 |
T |
 |
| Q |
108 |
ggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttcgcgcaatgcgactgttcctggacggaat |
190 |
Q |
| |
|
|||||||||| ||||| || |||||||| ||||||||||| ||||| ||||| || || | ||| || ||||||||||||||| |
|
|
| T |
12547176 |
ggaatggaagcttccttataagaagctcggtgctcttctggtacttgcggatctcacgaagtgcaacagttcctggacggaat |
12547258 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 9866734 - 9866809
Alignment:
| Q |
8 |
acaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcct |
83 |
Q |
| |
|
|||||||| ||| ||||||||||||||| ||||||||| ||||||||| || || |||||||| |||||||||| |
|
|
| T |
9866734 |
acaagatagtctttagcagcttcttgaagagcagaaacatcactactctagaacctcagatcagtcttgaaatcct |
9866809 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 9894685 - 9894610
Alignment:
| Q |
17 |
gcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttc |
93 |
Q |
| |
|
|||||| || ||||||||| |||||||||||||||||||| || || ||| |||| ||| |||||||||| ||||| |
|
|
| T |
9894685 |
gcttcaacaacttcttgaacagcagaaacagcactactctggaacctcagaccagtcttg-aatcctgagcaatttc |
9894610 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 24860594 - 24860416
Alignment:
| Q |
11 |
agatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttgga |
110 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| |||||||| || | |||||| ||||||||||| ||||||||||||||||| | | ||||| |
|
|
| T |
24860594 |
agataagcttcagcagcttcttgaagagcagaaacagcgctactctggaaacggagatcggttttgaaatcttgagcgatttcacgaacgagacgttgga |
24860495 |
T |
 |
| Q |
111 |
atggaagtttcctaatgagaagctcagtgctcttctgatactttcggatttcgcgcaatgcgactgttcctggacggaa |
189 |
Q |
| |
|
|||||||||| | ||||||||||| ||||| || || ||||| ||||||||||| | ||| || ||||| |||||||| |
|
|
| T |
24860494 |
atggaagttttcggatgagaagctctgtgcttttttggtacttgcggatttcgcgaagtgcaacggttccgggacggaa |
24860416 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 44771097 - 44771137
Alignment:
| Q |
59 |
aatctgagatcagttttgaaatcctgagcgatttcacgaac |
99 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44771097 |
aatctgagatcggttttgaaatcctgagcgatttcacgaac |
44771137 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 40035909 - 40035830
Alignment:
| Q |
74 |
ttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactt |
153 |
Q |
| |
|
||||| |||||||| |||||||||||||| || |||||||| || ||||| || | |||||||| |||||||||||||| |
|
|
| T |
40035909 |
ttgaagtcctgagcaatttcacgaaccaacctctggaatgggagcttcctgatcaagagctcagtactcttctgatactt |
40035830 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 64 - 159
Target Start/End: Complemental strand, 34748750 - 34748655
Alignment:
| Q |
64 |
gagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactttcggat |
159 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||| | ||||| || ||||| | ||||| || || ||||||||||| ||||| ||||| |
|
|
| T |
34748750 |
gagatcagtcttgaaatcctgagcgatctcacgaaccagacgctggaaggggagtttgcggatgaggagttcggtgctcttctggtacttacggat |
34748655 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 40045234 - 40045155
Alignment:
| Q |
74 |
ttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactt |
153 |
Q |
| |
|
||||| |||||||| |||||||||||||| || ||||| || || ||||| || | |||||||| |||||||| ||||| |
|
|
| T |
40045234 |
ttgaagtcctgagcaatttcacgaaccaacctctggaaggggagcttcctgatcaagagctcagtactcttctggtactt |
40045155 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 17769257 - 17769342
Alignment:
| Q |
26 |
gcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaa |
111 |
Q |
| |
|
||||||||||| |||||||||| |||||||| ||||| |||||| ||||||||||||| | |||||| | ||| ||||||||||| |
|
|
| T |
17769257 |
gcttcttgaagagcagaaacagtactactctaaaatcggagatctgttttgaaatccttcgtgatttctctaacaaatctttggaa |
17769342 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 1539209 - 1539294
Alignment:
| Q |
26 |
gcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaa |
111 |
Q |
| |
|
||||||||||| | |||||||| |||||||| ||||| |||||| |||||||||| || | |||||| | ||| ||||||||||| |
|
|
| T |
1539209 |
gcttcttgaagagaagaaacagtactactctaaaatcggagatctgttttgaaatacttcgtgatttctctaacaaatctttggaa |
1539294 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 27440930 - 27440846
Alignment:
| Q |
26 |
gcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttgga |
110 |
Q |
| |
|
||||||||||| ||||||||| ||||||| ||||| |||||| ||||||||||||| | |||||| | ||| |||||||||| |
|
|
| T |
27440930 |
gcttcttgaagagcagaaacaatgctactctaaaatcggagatctgttttgaaatccttcgtgatttctctaacaaatctttgga |
27440846 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University