View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3436R-Insertion-2 (Length: 970)
Name: NF3436R-Insertion-2
Description: NF3436R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3436R-Insertion-2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 179 - 571
Target Start/End: Complemental strand, 27446606 - 27446200
Alignment:
| Q |
179 |
tattagattctctttaaacaaa--tgtaatattcttttagtgagcaattaagatgatgagaataacgtatcctagttcatctctggaaataatgaaccaa |
276 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
27446606 |
tattagattctctttaaacaaaaatgtaatattcttttagtgagcaattaagatgatgagaataacgtatcctagttcatctctggaaataatgaaacaa |
27446507 |
T |
|
| Q |
277 |
aattttggcattttttattgtttccagaaaacgtgaacaattgttaaaatcaacttttttgttaatat----aaatttagaaaataaaaatagaaattga |
372 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27446506 |
aattttggtattttttattgtttccagaaaacgtgaacaattgttaaaatcaacttttttgttaatataaataaatttagaaaataaaaatagaaattga |
27446407 |
T |
|
| Q |
373 |
ttttactaagtaaacgaggttaatcgtgtttagaatattttatatta--------taaattccaacaacctgcacaatgtgattggaccacaacaattta |
464 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27446406 |
ttttactaagtaaacgaggttaattgtgtttagaatattttatattataaatttttaaattccaagaacctgcacaatgtgattggaccacaacaattta |
27446307 |
T |
|
| Q |
465 |
agaaagcaactagcggctgtaggaaatacaggagtgatctatatgtattcatttccattgcctgttgtccatacatgaaacttaaagttattacttaaag |
564 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
27446306 |
agaaaacaactagcggctgtaggaaatacaggagtgatctatatgtattcatttccattgcttgttgtacatacatgaaacttaaagttattccttaaag |
27446207 |
T |
|
| Q |
565 |
ttattgc |
571 |
Q |
| |
|
||||||| |
|
|
| T |
27446206 |
ttattgc |
27446200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 648 - 920
Target Start/End: Complemental strand, 27446124 - 27445853
Alignment:
| Q |
648 |
ataaaatttttcattgaatttctattagaacaaggttgggtgacataagtttaattagtgtttcacttatgttttgcgagttgattcagttgctaaataa |
747 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
27446124 |
ataaaaattttcattgaatttctattagaacaaggttggctgacataagtttaattagtgtttcacttacgttttgcgggttgattcagttgctaaataa |
27446025 |
T |
|
| Q |
748 |
aatataaaccgcaagccgaacaaaaccatgtgattgagtcnnnnnnntgatctgaatatgttcaaaccaaatgcaannnnnnnactgttttcggtttgga |
847 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||| || ||||||||||| ||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
27446024 |
aatatagaccgcaagccgaacaaaaccatgtggttgaatc---aaaatgatctgaatacgttcaaaccgaatgcaa-ttttttactgttttcggtttgga |
27445929 |
T |
|
| Q |
848 |
tagttttaatttatggtatcatgttaatattttatgattcagt-aaatgc-aaatcgtaaa-cactagcaattttt |
920 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||| |||||||| |||||| |||||||||| |||||||||||||| |
|
|
| T |
27445928 |
tagatttaatttacggtatcatgttaatattttaagattcagtaaaatgcaaaatcgtaaaccactagcaattttt |
27445853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 27446890 - 27446768
Alignment:
| Q |
9 |
acattttcaactataaatttgttcttttcattgatcaattggagattgcacttgatgattccaactggcctgtgaaatacattgcatttgccccagtttg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27446890 |
acattttcaactataaatttgttcttttcattgatcaattggagattgcacttgatgattccaactggcctgtgaaatacattgcatttgccccagtttg |
27446791 |
T |
|
| Q |
109 |
taaaaaagaaactatattacata |
131 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
27446790 |
taaaaaagaaactatattacata |
27446768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 681 - 716
Target Start/End: Complemental strand, 43507262 - 43507227
Alignment:
| Q |
681 |
ggttgggtgacataagtttaattagtgtttcactta |
716 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43507262 |
ggttgggtgacataagtttaattagtgtttctctta |
43507227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 644 - 720
Target Start/End: Original strand, 4658456 - 4658532
Alignment:
| Q |
644 |
ttctataaaatttttcattgaatttctattagaacaaggttgggtgacataagtttaattagtgtttcacttatgtt |
720 |
Q |
| |
|
||||||||||||| |||||||||||||| || || ||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
4658456 |
ttctataaaatttctcattgaatttctacgagtactaggttgggtgacaaaagtttaattagtgtttttcttatgtt |
4658532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 646 - 720
Target Start/End: Original strand, 28611115 - 28611189
Alignment:
| Q |
646 |
ctataaaatttttcattgaatttctattagaacaaggttgggtgacataagtttaattagtgtttcacttatgtt |
720 |
Q |
| |
|
||||||||||| ||||||||||||||| | | ||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
28611115 |
ctataaaatttctcattgaatttctataattattaggttggatgacataagtttaattagtgtttctcttatgtt |
28611189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 644 - 717
Target Start/End: Complemental strand, 20482970 - 20482897
Alignment:
| Q |
644 |
ttctataaaatttttcattgaatttctattagaacaaggttgggtgacataagtttaattagtgtttcacttat |
717 |
Q |
| |
|
|||||||||||||| ||||||||| |||| || || |||||| |||| |||||||||||||||||||| ||||| |
|
|
| T |
20482970 |
ttctataaaattttccattgaattcctatgagtactaggttgagtgatataagtttaattagtgtttctcttat |
20482897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 656 - 720
Target Start/End: Original strand, 8151123 - 8151187
Alignment:
| Q |
656 |
tttcattgaatttctattagaacaaggttgggtgacataagtttaattagtgtttcacttatgtt |
720 |
Q |
| |
|
||||||||| ||||||| || || ||||||||||||| ||||||||||||| |||| |||||||| |
|
|
| T |
8151123 |
tttcattgagtttctatgagtactaggttgggtgacacaagtttaattagtatttctcttatgtt |
8151187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University