View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3436R-Insertion-3 (Length: 940)
Name: NF3436R-Insertion-3
Description: NF3436R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3436R-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 9 - 378
Target Start/End: Original strand, 35034234 - 35034599
Alignment:
| Q |
9 |
tggtttactttaacttttaccaaactaatacaatgatctgatttcctttgtgaagtgaaccatgaaaagtccaaaatgaagtatgcatcaaagaaaagca |
108 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35034234 |
tggtttacttttacttttaccaaactaatacaatgatctgatttcctttgtgaagtgaaccatgaaaagtccaaaatgaagtatgcatcaaagaaaagca |
35034333 |
T |
|
| Q |
109 |
cactaatttgaacacattccatcctaaaacatcagtatcattgcaaatttatattgaaaacaataattgactcgatcagtatttgtagttgtggaagtat |
208 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35034334 |
cactaatttgaacacattccatcctaaaacatcagtatcattgcaaatta----tgaaaacaataattgactcgattagtatttgtagttgtggaagtat |
35034429 |
T |
|
| Q |
209 |
gtaataaaattttaaactagattaacaggccttttcccccataacgtgtcatcaactagtaaacttttaagnnnnnnnctctcataatgttgttctacca |
308 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35034430 |
gtaataaaattttaaattagattaacaggccttttcccccataacgtgtcatcaactagtaaacttttaagaaaaaaactctcataatgttgttctacca |
35034529 |
T |
|
| Q |
309 |
agtacacaaccacacattgtgcactgaagcacatcaatggactcaagtcacaaatatatttaaggcattc |
378 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35034530 |
agtacacaaccacacattgtgcactgaagcacatcaatggactcaagtcacaaatatatttaaggcattc |
35034599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 542 - 835
Target Start/End: Original strand, 35056875 - 35057167
Alignment:
| Q |
542 |
catatgaagaatagaagaatagaagaatctcaggatcaataatcaacaattgccgcatcggtcaatcaacaattacttaaaattgaaaactgtgtttgtt |
641 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
35056875 |
catatgaagaatagaagaatctt-gaatctcaggatcaataatcaacaattgccgcatccgtcaatcaacaattacttaaaattgaaaactgtgtttgtt |
35056973 |
T |
|
| Q |
642 |
ttagcaattaggatgnnnnnnnntcgttgaaaacaaaaataagagagagatcaagtaaacttatttgaatagtgttgaagaatttagccatcgaca-tgg |
740 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
35056974 |
ttagcaattaggatgaaaaaaa-tcgttgaaaacaaaaataagagagagatcaagtaaacttatttgaatagtgttgaataatttagccatcgacactgg |
35057072 |
T |
|
| Q |
741 |
ttccaataacatcttttgaaaataagtaatatgaaacattcaaaataataaatcatcacataaacttgagattacataacaaatcaaatttatct |
835 |
Q |
| |
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| T |
35057073 |
ttccaataatatcttttgaaagtaagtaatatgaaacattcaaaataataaatcatcacataaacctgagattacagaacaaatcaaatttatct |
35057167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 35056482 - 35056619
Alignment:
| Q |
9 |
tggtttactttaacttttaccaaactaatacaatgatctgatttcctttgtgaagtgaaccatgaaaagtccaaaatgaagtatgcatcaaagaaaagca |
108 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35056482 |
tggtttacttttacttttaccaaactaatacaatgatctgatttcctttgtgaagtgaaccatgaaaagtccaaaatgaagtatgcatcaaagaaaagca |
35056581 |
T |
|
| Q |
109 |
cactaatttgaacacattccatcctaaaacatcagtat |
146 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
35056582 |
cactaatttgaacacattccatcctaaaacatcagtat |
35056619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 437 - 539
Target Start/End: Original strand, 35034658 - 35034760
Alignment:
| Q |
437 |
ccgtctggattggttcagcaagcacctcccagcattggtccaagtcttcgcttaagcgagcttcattgacctaaattgtgaattgttaattataacattt |
536 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35034658 |
ccgtctggattggttcagcaagcacctcccagcattggtccaagtcttcgcttaagcgagcttcattgacctaaattgtgaattgttaattataacattt |
35034757 |
T |
|
| Q |
537 |
aca |
539 |
Q |
| |
|
||| |
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|
| T |
35034758 |
aca |
35034760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 774 - 839
Target Start/End: Original strand, 43017355 - 43017420
Alignment:
| Q |
774 |
aaacattcaaaataataaatcatcacataaacttgagattacataacaaatcaaatttatctcaga |
839 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||| |
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| T |
43017355 |
aaacattcaaaataataaatcatcacataaacctgagattacataacaagtcgaatttatctcaga |
43017420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 668 - 727
Target Start/End: Original strand, 43017292 - 43017351
Alignment:
| Q |
668 |
ttgaaaacaaaaataagagagagatcaagtaaacttatttgaatagtgttgaagaattta |
727 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
43017292 |
ttgaaaacaagaataagagagtgatcaagtaaacttatttgaatagtgttgaagaattta |
43017351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 837 - 940
Target Start/End: Original strand, 35057197 - 35057301
Alignment:
| Q |
837 |
agaaaattggaaaggggaaatggttttcttgttggatgt-ggtgtatcta--ttatctgccttgagtgtgttgcttatattcatttttataggcacaggc |
933 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| ||||| |||||||||| |||||||| | ||||||| |||||||| ||||||||||||||||| || |
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| T |
35057197 |
agaaaattggaa-gaggaaatggttttcttgtttgatgtgggtgtatctattttatctgcttggagtgtgctgcttata-tcatttttataggcacaagc |
35057294 |
T |
|
| Q |
934 |
agttgac |
940 |
Q |
| |
|
|| |||| |
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|
| T |
35057295 |
aggtgac |
35057301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 272; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 34 - 378
Target Start/End: Complemental strand, 36854547 - 36854203
Alignment:
| Q |
34 |
taatacaatgatctgatttcctttgtgaagtgaaccatgaaaagtccaaaatgaagtatgcatcaaagaaaagcacactaatttgaacacattccatcct |
133 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36854547 |
taatacaacaatctgatttcctttgtgaagtgaaccatgaaaagtcctaaatgaagtatgcatcaaagaaaagcacactaatttgaacacattccatcct |
36854448 |
T |
|
| Q |
134 |
aaaacatcagtatcattgcaaatttatattgaaaacaataattgactcgatcagtatttgtagttgtggaagtatgtaataaaattttaaactagattaa |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36854447 |
aaaacatcagtatcattgcaaatttatattgaaaacaataattgactcgattagtatttgtagttgtggaagtatttaataaaattttaaactagattaa |
36854348 |
T |
|
| Q |
234 |
caggccttttcccccataacgtgtcatcaactagtaaacttttaagnnnnnnnctctcataatgttgttctaccaagtacacaaccacacattgtgcact |
333 |
Q |
| |
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|| ||| |||||||||||| ||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| ||||||| |
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| T |
36854347 |
caagccctttcccccataatgtgtcatcagctagtaaacttttaagaaaaaaactctcctaatgttgttctaccaagtacacagccacacatcgtgcact |
36854248 |
T |
|
| Q |
334 |
gaagcacatcaatggactcaagtcacaaatatatttaaggcattc |
378 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36854247 |
gaagcacttcaatggactcaagtcacaaatatatttaaggcattc |
36854203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 437 - 539
Target Start/End: Complemental strand, 36854144 - 36854046
Alignment:
| Q |
437 |
ccgtctggattggttcagcaagcacctcccagcattggtccaagtcttcgcttaagcgagcttcattgacctaaattgtgaattgttaattataacattt |
536 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||| ||||||| ||||||||||||||||| |
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|
| T |
36854144 |
ccgtctggattggttcagcaagcacctcccagcactggtccaagtcttcgcttaagcgagattcgttgacc----ttgtgaaatgttaattataacattt |
36854049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 685 - 752
Target Start/End: Original strand, 14445479 - 14445547
Alignment:
| Q |
685 |
agagagatcaagtaaacttatttg-aatagtgttgaagaatttagccatcgacatggttccaataacat |
752 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| | ||| |||||||||||| |||| |||||||| |
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|
| T |
14445479 |
agagagatcaagtaaacttatctgtaatagtgttgtataatgtagccatcgacactgttctaataacat |
14445547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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