View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3436R-Insertion-5 (Length: 710)
Name: NF3436R-Insertion-5
Description: NF3436R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3436R-Insertion-5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 602; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 9 - 701
Target Start/End: Original strand, 35094458 - 35095164
Alignment:
| Q |
9 |
atacccacgaataatgacaatatcttcagaaagtggatggcatgatagttcatgttttcacttaattattggataggctatgccgttgagtgaatcagca |
108 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
35094458 |
atacccacaaataatgacaatatcttcagaaagtggatggcatgatagttcatgttttcacttaattattggataggctttaccgttgagtgaatcagca |
35094557 |
T |
|
| Q |
109 |
cctttagtcacctttccctatgaaatcaactttgaatttttgctttattctaggacggttactactttgataatcgttattgacaaatagtaatgtttta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
35094558 |
cctttagtcacctttccctatgaaatcaactttgaatttttgctttattcaaggacagttactactttgataatcgttattgacaaatagtaaggtttaa |
35094657 |
T |
|
| Q |
209 |
gagatgctgcttccattttatatagcacctgatctgtacttgagaattcgacatttccatcaaatgcaaaaggaatattcatccccataacttaattcat |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35094658 |
gagatgctgcttccattttatatagcacctgatctgtacttgagaattcgacatt-ccatcaaatgcaaaaggaatattcatccccataacttaattcat |
35094756 |
T |
|
| Q |
309 |
gtacctggttaatcatctttatgtgcatatgcatcaattgaaggtttttgaatttttatttgtaggtacaagtttgcgacccaaaactacaccaaagatg |
408 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35094757 |
gtacctggttaatcatctttatgtacatatgcatcaattgaaggtttttgaatttttatttgtaggtacaagtttgcgacccaaaactacaccaaagatg |
35094856 |
T |
|
| Q |
409 |
tgcaaggatgaagatgatgatttgtgcggtgctagcgcagctcctgctccaaaaacatcaaaacctttaaatttgaaatcaactgcagctgatgctgctg |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35094857 |
tgcaaggatgaagatgatgatttgtgcggtgctagcgcagctcctgctccaaaaacatcaaaacctttaaatttgaaatcaactgcagctgatgctgctg |
35094956 |
T |
|
| Q |
509 |
ctgcccgggataccactgcagctcctgcacccactacaagggccaaacccttgttagctggcagatgtcggggagccaaacctgc--------------- |
593 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35094957 |
ctgcccaggataccactgcagctcctgcacccactacaagggccaaacccttgttagctggcagatgtcggggagccaaacctgctgctccaaaattagg |
35095056 |
T |
|
| Q |
594 |
tgctcagaggataatccgaacaccatccggggtgtaaaccaaattgccacttgcaagggcacaaaagaaacgaggaaatgttgcgtttttaggtttcttt |
693 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
35095057 |
tgctcagaggataatccgaacaccatccggggtgtaaaccaaattgccacttgccagggcacaaaagaaacgaggaaatgttgcgtttgtaggttccttt |
35095156 |
T |
|
| Q |
694 |
tttcttgt |
701 |
Q |
| |
|
|||||||| |
|
|
| T |
35095157 |
tttcttgt |
35095164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 54 - 430
Target Start/End: Complemental strand, 31173517 - 31173147
Alignment:
| Q |
54 |
tagttcatgttttcacttaattattggataggctatgccgttgagtgaatcagcacctttagtcacctttccctatgaaatcaactttgaatttttgctt |
153 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31173517 |
tagttcatgttttcacttaactat-----aggctttgcaattgagtgaatcagcacctttagtcacctttccctatgagatcaactttgaatttttgctt |
31173423 |
T |
|
| Q |
154 |
tattctaggacggttactactttgataatcgttattgacaaatagtaatgttttagagatgctgcttccattttatatagcacctgatctgtacttgaga |
253 |
Q |
| |
|
||| | ||| ||||||||| || ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31173422 |
tatgcgagggcggttactaatt-gataatcattattgaaaaatagtaatgttttagagatgctgcttccattttatatagcacctgatctgtacttgaga |
31173324 |
T |
|
| Q |
254 |
attcgacatttccatcaaatgcaaaaggaatattcatccccataacttaattcatgtacctggttaatcatctttatgtgcatatgcatcaattgaaggt |
353 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31173323 |
attcgacatttccatcaaatgcgaaaggaattttcatccccatatcttaattcatgtacctcgttaatcatctttatgtgcacatgcatcaattgaaggg |
31173224 |
T |
|
| Q |
354 |
ttttgaatttttatttgtaggtacaagtttgcgacccaaaactacaccaaagatgtgcaaggatgaagatgatgatt |
430 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||| |||||||||||||||| |
|
|
| T |
31173223 |
ttttgaatttttatttgtagttacaagtttgcgacccaaaactacaccaaagttgagcaaagatgaagatgatgatt |
31173147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 54 - 361
Target Start/End: Original strand, 11267904 - 11268210
Alignment:
| Q |
54 |
tagttcatgttttcacttaattattggataggctatgccgttgagtgaatcagcacctttagtcacctttccctatgaaatcaactttgaatttttgctt |
153 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
11267904 |
tagttcatgttttcacttaacgattggataggctttgccattgagtgaatcagcacctttagtcacctttccctatgagatcaactttgaatatttgctt |
11268003 |
T |
|
| Q |
154 |
tattctaggacggttactactttgataatcgttattgacaaatagtaatgttttagagatgctgcttccattttatatagcacctgatctgtacttgaga |
253 |
Q |
| |
|
||| | ||||||||||||| || |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11268004 |
tatgcaaggacggttactaatt-gataataattattgaaaaatagtaatgttttagagatgctgcttccattttatatagcacctgatctgtacttgaga |
11268102 |
T |
|
| Q |
254 |
attcgacatttccatcaaatgcaaaaggaatattcatccccataacttaattcatgtacctggttaatcatctttatgtgcatatgcatcaattgaaggt |
353 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11268103 |
attcgacatctccatcaaatgcaaaaggaattttcatccccatatcttaattcatgtacctgattaatcatctttatgtgcacatgcatcaattgaaggc |
11268202 |
T |
|
| Q |
354 |
ttttgaat |
361 |
Q |
| |
|
|||||||| |
|
|
| T |
11268203 |
ttttgaat |
11268210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 354 - 434
Target Start/End: Original strand, 11268975 - 11269055
Alignment:
| Q |
354 |
ttttgaatttttatttgtaggtacaagtttgcgacccaaaactacaccaaagatgtgcaaggatgaagatgatgatttgtg |
434 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
11268975 |
ttttgaatttttatttatagttacaagtttgcgacccaaaactacaccaaagttgagcaaggatgaagatgatgatttgtg |
11269055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 9e-69; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 247 - 598
Target Start/End: Original strand, 32587150 - 32587501
Alignment:
| Q |
247 |
cttgagaattcgacatttccatcaaatgcaaaaggaatatt-catccccataacttaattcatgtacctggttaatcatctttatgtgcatatgcatcaa |
345 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| |||| ||||| | ||||||||| |
|
|
| T |
32587150 |
cttgaaaattcgacagttccatcaaatgcaaaaggaatattgcagacccattccttaattcatgtacctggttaattatctgtatgtactcatgcatcaa |
32587249 |
T |
|
| Q |
346 |
ttgaaggtttttgaatttttatttgtaggtacaagtttgcgacccaaaactacaccaaagatgtgcaaggatgaagatgatgatttgtgcggtgctagcg |
445 |
Q |
| |
|
|||| |||||| |||| ||||||||||| | |||||| ||||||||||| | |||||| | || ||| |||||||||||| |||||||| ||||| | | |
|
|
| T |
32587250 |
ttgacggtttt-gaatatttatttgtagcttcaagttcgcgacccaaaattccaccaaggttgagcagggatgaagatgaagatttgtggggtgccatag |
32587348 |
T |
|
| Q |
446 |
cagctcctgctccaaaaacatcaaaacctttaaatttgaaatcaactgcagctgatgctgctgctgcccgggataccactgcagctcctgcacccactac |
545 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||| || || || || ||| || || | | ||| | ||| |||||||||||| |||||||| |
|
|
| T |
32587349 |
cagctcctgctccaacaacatcaagacctttaaatttgaattcgacaacaactaatgatgatgatccatgggctgccattgcagctcctgcgcccactac |
32587448 |
T |
|
| Q |
546 |
aagggccaaacccttgttagctggcagatgtcggggagccaaacctgctgctc |
598 |
Q |
| |
|
|||||||| ||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
32587449 |
aagggccaggcccttagcagctggcagaggtcggggagccaaacctgctgctc |
32587501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 626 - 676
Target Start/End: Original strand, 32587547 - 32587597
Alignment:
| Q |
626 |
tgtaaaccaaattgccacttgcaagggcacaaaagaaacgaggaaatgttg |
676 |
Q |
| |
|
||||||||||||| |||||| | |||||||||||| ||| ||||||||||| |
|
|
| T |
32587547 |
tgtaaaccaaatttccactttccagggcacaaaaggaacaaggaaatgttg |
32587597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University