View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3436R-Insertion-6 (Length: 682)
Name: NF3436R-Insertion-6
Description: NF3436R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3436R-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 585; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 7 - 660
Target Start/End: Complemental strand, 36283149 - 36282497
Alignment:
| Q |
7 |
cacctacgtgacaaaacactagtagcaatagcttcttttgttggtaggaatgaaaggatattagcaagtacttcattgtgtaaactactgatcctatcaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36283149 |
cacctacgtgacaaaacactagtagcaatagcttcttttgttggtaggaatgaaaggatattagcaagtacttcattgtgtaaactactgatcctatcaa |
36283050 |
T |
|
| Q |
107 |
cttgttcttctagttctagttttattttggccatgcaagggttttaatgtgggatatgggaaatgtaaataaaattagaggtgaaatggaagaggaaaac |
206 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36283049 |
cttgttcttctagttctagttttcttttggccatgcaagggttttaatgtgggatatgggaaatgtaaataaaattagaggtgaaatggaagaggaaaac |
36282950 |
T |
|
| Q |
207 |
gtacctaaaggagaggaaatatgaacggtggtaggactttacagtgacagtgaaatacggtgggaaagtatgatatgaagttaaaaagaagatgataacc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36282949 |
gtacctaaaggagaggaaatatgaacggtggtaggattttacagtgacggtgaaatacggtgggaaagtatgatatgaagttaaaaagaagatgataacc |
36282850 |
T |
|
| Q |
307 |
atttggtaaagttaactgtttgagatagtgggcggtggcggtttggcggtgctatagactagctatatgtaaaatgtaaagtaggagagnnnnnnnagtt |
406 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
36282849 |
atttggtaaagttaattgtttgagatagtgggcggtggcggtttggcggtgctatagactagctatatgtaaaatgtaaagtaggagagtttttttaatt |
36282750 |
T |
|
| Q |
407 |
agttaggaaatgaagaggcatgtacacaaagaggaagaggattacaattctctcatgaaaattttgtcgacttttctccattttcaatctacatggttaa |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36282749 |
agttaggaaatgaagaggcatgtacacaaagaggaagaggattacaattctctcatgaaaattttgtcgacttttctccattttcaatctacatggttaa |
36282650 |
T |
|
| Q |
507 |
aatgctcctacgacttttcttagtaattcaactttagttttctcttatatgtttgaaggttgagatttcatttaagaaaaattgagagaacccaaattct |
606 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36282649 |
aatgctcctactacttttcttagtaatttaactttagttttctctcatatgtttgaaggttgagatttcatttaagaaaaattgagagaatccaaattct |
36282550 |
T |
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| Q |
607 |
tacaaagagatagattctttagaggatgaagggatagattttaggctaaattac |
660 |
Q |
| |
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|
| T |
36282549 |
tacaaagagatagattttttagaggatgaa-ggatagattttaggctaaattac |
36282497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 34553846 - 34553770
Alignment:
| Q |
34 |
atagcttcttttgttggtaggaatgaaaggatattagcaagtacttcattgtgtaaactactgatcctatcaacttg |
110 |
Q |
| |
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||||| ||||| |||||||||||||||||||||| ||||| ||| ||||| |||| |||||||||||||||||||| |
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|
| T |
34553846 |
atagcatctttggttggtaggaatgaaaggatataagcaattacctcatttggtaatctactgatcctatcaacttg |
34553770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 29914738 - 29914536
Alignment:
| Q |
7 |
cacctacgtgacaaaacactagtagcaatagcttcttttgttggtaggaatgaaaggatattagcaagtacttcatt-----gtgtaaactactgatcct |
101 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||| |||||||||||| || ||||||||||||||||| |||||||||||||| || |
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| T |
29914738 |
cacctacgtgacaaaacactagtttcaatagcttcttttgttgctaggaatgaaagaattttagcaagtacttcatttcctcatgtaaactactgatact |
29914639 |
T |
|
| Q |
102 |
atcaacttgttcttctagttctagttttattttggccatgcaagggttttaatgtgggatatgggaaatgtaaataaaattagaggtgaaatggaagagg |
201 |
Q |
| |
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|||||||| || ||||||||| |||| || |||||||| | |||| ||| | |||| || ||||| |||||||||||||||||||||||| |
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| T |
29914638 |
atcaacttatt-------ttctagtttccttttagctatgcaaggatgttaaaatggtgtttggggaaaataaatgaaattagaggtgaaatggaagagg |
29914546 |
T |
|
| Q |
202 |
aaaacgtacc |
211 |
Q |
| |
|
|||||||||| |
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|
| T |
29914545 |
aaaacgtacc |
29914536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 29963891 - 29963689
Alignment:
| Q |
7 |
cacctacgtgacaaaacactagtagcaatagcttcttttgttggtaggaatgaaaggatattagcaagtacttcatt-----gtgtaaactactgatcct |
101 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||||||||||| || ||||||||||||||||| |||||||||||||| || |
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| T |
29963891 |
cacctacgtgacaaaacactagtttcaatagcttcttttgttgctaggaatgaaagaattttagcaagtacttcatttcctcatgtaaactactgatact |
29963792 |
T |
|
| Q |
102 |
atcaacttgttcttctagttctagttttattttggccatgcaagggttttaatgtgggatatgggaaatgtaaataaaattagaggtgaaatggaagagg |
201 |
Q |
| |
|
|||||||| || ||||||||| |||| || |||||||| | |||| ||| | |||| || ||||| |||||||||||||||||||||||| |
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| T |
29963791 |
atcaacttatt-------ttctagtttccttttagctatgcaaggatgttaaaatggtgtttggggaaaataaatgaaattagaggtgaaatggaagagg |
29963699 |
T |
|
| Q |
202 |
aaaacgtacc |
211 |
Q |
| |
|
|||||||||| |
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| T |
29963698 |
aaaacgtacc |
29963689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 265 - 344
Target Start/End: Complemental strand, 29897520 - 29897434
Alignment:
| Q |
265 |
ggtgggaaagtatgatatgaagttaaaaagaagatga-------taaccatttggtaaagttaactgtttgagatagtgggcggtgg |
344 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||| |||||||| |||| |
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| T |
29897520 |
ggtggaaaagtatgatatgaagttaaaaagaagaagaacatgtttaaccatttggtaaagttaatggtttgaggtagtgggcagtgg |
29897434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 555 - 596
Target Start/End: Original strand, 12906624 - 12906665
Alignment:
| Q |
555 |
atgtttgaaggttgagatttcatttaagaaaaattgagagaa |
596 |
Q |
| |
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|||||||| |||||||||| |||||||||||| ||||||||| |
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| T |
12906624 |
atgtttgatggttgagattacatttaagaaaacttgagagaa |
12906665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 544 - 596
Target Start/End: Complemental strand, 45235079 - 45235027
Alignment:
| Q |
544 |
ttttctcttatatgtttgaaggttgagatttcatttaagaaaaattgagagaa |
596 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| || |||||| ||||||||| |
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|
| T |
45235079 |
ttttctctcttatgtttgatggttgagatttcacttgagaaaacttgagagaa |
45235027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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