View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3436R-Insertion-8 (Length: 517)
Name: NF3436R-Insertion-8
Description: NF3436R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3436R-Insertion-8 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 9 - 517
Target Start/End: Original strand, 44155087 - 44155583
Alignment:
| Q |
9 |
attgtgagagatccgttgaattccttacacttgcgaattaatttggtgtttctttgattctctcatttaaatatgcatacaggcatgagtgttaatatta |
108 |
Q |
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| T |
44155087 |
attgtgagagatccgttgaattccttacacttgtgaattaatttggtgtttctttgattctctcatttaaatatgcatacaggcatgagtgttaatatta |
44155186 |
T |
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| Q |
109 |
attctatcgaatcttgtgctacaagtcatgttgcaattaacactaaaaatgaatgaagtgattgtagagaatcgagtgatgcaggcttctatgaaaattt |
208 |
Q |
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| T |
44155187 |
attctatcgaatcttgtgctacaagtcatgttgagattaacactaaaaatgaatgaagtgattgtagagaatcgagtgatgcaggcttctatgaaaattt |
44155286 |
T |
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| Q |
209 |
aatttccaaaataatcctttactcaataagtttacgttgttatttgtttcaatgttatatatctagcaagaataactatcgctgcattaagtgtttatgc |
308 |
Q |
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| T |
44155287 |
aatttccaaaataatcctttactcaataagtttacggtgttatttgtttcaatgttatacatctagcaagaataactatcgctgcattaagtgtttatgc |
44155386 |
T |
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| Q |
309 |
ttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggagcagagtttttctattgaagc |
408 |
Q |
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| T |
44155387 |
ttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggagcagagtt------------c |
44155474 |
T |
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| Q |
409 |
cagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagttttttgaaaagaatgcgatcatcaga |
508 |
Q |
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| T |
44155475 |
cagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagttttttgaaaagaatgcgatcatcaga |
44155574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 289 - 417
Target Start/End: Complemental strand, 40894457 - 40894330
Alignment:
| Q |
289 |
gctgcattaagtgtttatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggag |
388 |
Q |
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| T |
40894457 |
gctgcattaagtgtttatgcttttatgtggccaatatttctagtcatgcttcttaatagttttactctca--ctgatttgcaggtgcctggaggaaggag |
40894360 |
T |
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| Q |
389 |
caga-gtttttctattgaagccagtcaagt |
417 |
Q |
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| T |
40894359 |
cagaggtttttctattgaagccagtcaagt |
40894330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 304 - 509
Target Start/End: Original strand, 44214434 - 44214638
Alignment:
| Q |
304 |
tatgcttttatgtggccggtatttctagtcctgcttcttaatagttttactctcactctgatttgcaggtgtctggaggaaggagcagagt-ttttctat |
402 |
Q |
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| T |
44214434 |
tatgctattaggtggccagtatatcctgtcctgcttcttaatagttttattttcacta--atttgcaggtgtttggaggaaggagcagaggattttttgt |
44214531 |
T |
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| Q |
403 |
tgaagccagtcaagttgtcaggtgtcaagtgcttgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagttttttgaaaagaatgcgatc |
502 |
Q |
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| T |
44214532 |
taaagccagtcaaattgtcagatgtaagacgcctgaaagatttcatcatgagaggtgaagtgaaggatggcgagaaatgttctctcaaaagaatgcgatc |
44214631 |
T |
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| Q |
503 |
atcagat |
509 |
Q |
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| T |
44214632 |
atcagat |
44214638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 483
Target Start/End: Complemental strand, 40894326 - 40894279
Alignment:
| Q |
436 |
tgaaagagttcatcatgagaggtgaagtgaaagttggtgaggaaagtt |
483 |
Q |
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| T |
40894326 |
tgaaagatttcatcatgagaggtgaagtaaaagatggtgagaaaagtt |
40894279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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