View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3436_high_3 (Length: 259)
Name: NF3436_high_3
Description: NF3436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3436_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 25 - 196
Target Start/End: Original strand, 887296 - 887467
Alignment:
| Q |
25 |
aacaatgtgaagtttgaattactagttaaacattatataaaactgtcggtgagcacctttttattaagctacctttgattttatgatcctctaattaagt |
124 |
Q |
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| T |
887296 |
aacaatgtgaagtttgaattacaagttgaacattatataaccctctcggtgagcacctttttgtgaagctacctttgattttatgatcctctaattaagt |
887395 |
T |
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| Q |
125 |
aattatattctaacatgctagctatatatccttaattttcagagtaaaggaaatatatgcttgctaatcgaa |
196 |
Q |
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| T |
887396 |
aattatatactaacatgctagctatatatccttaattttcagagaaaaggaaatatatgcttgctattcgaa |
887467 |
T |
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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 31880668 - 31880610
Alignment:
| Q |
74 |
tgagcacctttttattaagctacctttgattttatgatcctctaattaagtaattatat |
132 |
Q |
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| T |
31880668 |
tgagcacctttttattaagctacctttgattttatgatcctctaattaaataattatat |
31880610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 31900074 - 31900142
Alignment:
| Q |
126 |
attatattctaacatgctagctatatatccttaattttcagagtaaaggaaatatatgcttgctaatcgaa |
196 |
Q |
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| T |
31900074 |
attatatactaacatgctagctatatatccttaattttcagagtaaaggaa--atatgtttgctaatcgaa |
31900142 |
T |
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