View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3436_low_4 (Length: 259)
Name: NF3436_low_4
Description: NF3436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3436_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 121 - 243
Target Start/End: Original strand, 27446768 - 27446890
Alignment:
| Q |
121 |
tatgtaatatagtttcttttttacaaactggggcaaatgcaatgtatttcacaggccagttggaatcatcaagtgcaatctccaattgatcaatgaaaag |
220 |
Q |
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| T |
27446768 |
tatgtaatatagtttcttttttacaaactggggcaaatgcaatgtatttcacaggccagttggaatcatcaagtgcaatctccaattgatcaatgaaaag |
27446867 |
T |
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| Q |
221 |
aacaaatttatagttgaaaatgt |
243 |
Q |
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| T |
27446868 |
aacaaatttatagttgaaaatgt |
27446890 |
T |
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Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 27446532 - 27446606
Alignment:
| Q |
1 |
ctaggatacgttattctcatcatcttaattgctcactaaaagaatattaca--tttgtttaaagagaatctaata |
73 |
Q |
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| T |
27446532 |
ctaggatacgttattctcatcatcttaattgctcactaaaagaatattacatttttgtttaaagagaatctaata |
27446606 |
T |
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