View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3436_low_5 (Length: 250)

Name: NF3436_low_5
Description: NF3436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3436_low_5
NF3436_low_5
[»] chr6 (10 HSPs)
chr6 (99-199)||(14766215-14766314)
chr6 (104-195)||(21118239-21118329)
chr6 (104-195)||(14763663-14763753)
chr6 (7-95)||(21118746-21118834)
chr6 (7-95)||(32342082-32342170)
chr6 (7-95)||(21118464-21118552)
chr6 (108-197)||(32342305-32342391)
chr6 (104-197)||(20727667-20727755)
chr6 (7-87)||(14763871-14763951)
chr6 (7-87)||(14766448-14766528)
[»] chr5 (9 HSPs)
chr5 (99-199)||(41341251-41341348)
chr5 (99-197)||(7400279-7400375)
chr5 (7-95)||(35428357-35428448)
chr5 (7-95)||(35429940-35430028)
chr5 (7-95)||(41341037-41341125)
chr5 (9-95)||(7400502-7400588)
chr5 (99-161)||(35429752-35429814)
chr5 (17-89)||(7658980-7659052)
chr5 (125-170)||(7659199-7659244)
[»] chr7 (14 HSPs)
chr7 (106-198)||(5447675-5447768)
chr7 (99-199)||(5439661-5439760)
chr7 (99-199)||(5448671-5448770)
chr7 (7-89)||(5448902-5448984)
chr7 (7-89)||(5439892-5439974)
chr7 (148-198)||(5438699-5438749)
chr7 (7-89)||(15589829-15589911)
chr7 (32-89)||(5438899-5438956)
chr7 (99-194)||(15589602-15589694)
chr7 (127-197)||(15588511-15588578)
chr7 (7-89)||(15588695-15588777)
chr7 (32-89)||(5447909-5447966)
chr7 (127-164)||(1813543-1813580)
chr7 (118-150)||(18673778-18673810)
[»] chr1 (11 HSPs)
chr1 (99-199)||(6138408-6138505)
chr1 (108-197)||(52022349-52022435)
chr1 (99-195)||(3742461-3742556)
chr1 (15-95)||(52022131-52022211)
chr1 (7-89)||(6139815-6139897)
chr1 (19-95)||(6138206-6138282)
chr1 (7-65)||(5397344-5397402)
chr1 (99-180)||(5397541-5397619)
chr1 (107-149)||(6140037-6140079)
chr1 (18-88)||(43834965-43835035)
chr1 (108-148)||(17645483-17645523)
[»] chr3 (15 HSPs)
chr3 (104-199)||(3371630-3371722)
chr3 (99-197)||(17730878-17730974)
chr3 (99-197)||(19032109-19032205)
chr3 (99-197)||(43979431-43979526)
chr3 (99-195)||(1027011-1027105)
chr3 (7-95)||(38183140-38183228)
chr3 (106-180)||(38182994-38183068)
chr3 (7-95)||(17731101-17731189)
chr3 (7-95)||(19032332-19032420)
chr3 (104-157)||(40195750-40195803)
chr3 (7-94)||(1026796-1026883)
chr3 (7-89)||(3371405-3371487)
chr3 (119-190)||(21344517-21344585)
chr3 (7-83)||(49582603-49582680)
chr3 (32-84)||(21344727-21344779)
[»] chr4 (9 HSPs)
chr4 (106-197)||(14508946-14509036)
chr4 (15-95)||(14508733-14508813)
chr4 (107-160)||(4528729-4528782)
chr4 (108-199)||(31322837-31322929)
chr4 (127-197)||(45676540-45676607)
chr4 (32-95)||(10550051-10550114)
chr4 (7-95)||(31327200-31327288)
chr4 (16-95)||(31322582-31322661)
chr4 (139-199)||(8445696-8445753)
[»] chr2 (9 HSPs)
chr2 (7-95)||(4660143-4660230)
chr2 (106-190)||(20594841-20594922)
chr2 (106-164)||(33300962-33301020)
chr2 (7-95)||(20594616-20594704)
chr2 (104-141)||(7371844-7371881)
chr2 (108-149)||(38472142-38472183)
chr2 (103-146)||(10751298-10751342)
chr2 (99-147)||(33300900-33300948)
chr2 (137-199)||(33302436-33302495)
[»] chr8 (3 HSPs)
chr8 (7-95)||(392343-392431)
chr8 (107-199)||(7284415-7284504)
chr8 (7-95)||(7278087-7278175)


Alignment Details
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 99 - 199
Target Start/End: Complemental strand, 14766314 - 14766215
Alignment:
Q  99 ggtcctggttttttctccggttttggagtttccacgttatattcttgtg-ttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 197  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||| |||||||||||||    
T  14766314 ggtcgtggttttttctccgattttggagtttccacgttatattcttgtgtttgtgattgtgtttat--tttttcttcttcagccctgttatttcctaaca 14766217  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 195
Target Start/End: Complemental strand, 21118329 - 21118239
Alignment:
Q  104 tggttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaa 195  Q
    ||||||||||| || |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| | ||| |||||||    
T  21118329 tggttttttcttcgattttggagtttccacgttatattcttgtgtagtgattgtgttt-ttatttttcttcttcagccttgttaattcctaa 21118239  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 104 - 195
Target Start/End: Complemental strand, 14763753 - 14763663
Alignment:
Q  104 tggttttttctccggttttggagtttccacgttatattcttgtg-ttgtgattgtgtttattatttttcttcttcagccctattatttcctaa 195  Q
    ||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||  |||||||| ||||||||| |||||||||||    
T  14763753 tggttttttcttcggttttggagtttccatgttatatttttgtgtttgtgattgtgtttat--tttttctttttcagccctgttatttcctaa 14763663  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 21118834 - 21118746
Alignment:
Q  7 gaagcaaagggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 95  Q
    |||||||  ||||| |||| |||| |||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||| |||||    
T  21118834 gaagcaagaggaaggccaaggctatatattgaacctagtttctttgtttttagatgcaccagtcagtagcactttaagcttatatctga 21118746  T

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Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 32342082 - 32342170
Alignment:
Q  7 gaagcaaagggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 95  Q
    ||||||||||||||||||| |||| ||||||||  ||| ||||||||||||||||||||| |||||||  ||||||||||||| |||||    
T  32342082 gaagcaaagggaagaccaaggctatatattgaatataagttctttgtttttagatgcaccggtcagtaacactttaagcttatatctga 32342170  T

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Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 21118552 - 21118464
Alignment:
Q  7 gaagcaaagggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 95  Q
    |||||||  ||||| |||| |||| |||||||||||| |||||||||||||||||||||| |||| ||| ||||||||||||| |||||    
T  21118552 gaagcaagaggaaggccaaggctatatattgaacctagtttctttgtttttagatgcaccagtcaatagcactttaagcttatatctga 21118464  T

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Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 32342305 - 32342391
Alignment:
Q  108 tttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 197  Q
    |||||||||  |||||||||||||||||||||||||||||| |||||| |||   ||||||||||||||||||  | |||||||||||||    
T  32342305 tttttctccaattttggagtttccacgttatattcttgtgtagtgattatgt---ttatttttcttcttcagctatgttatttcctaaca 32342391  T

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Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 197
Target Start/End: Original strand, 20727667 - 20727755
Alignment:
Q  104 tggttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 197  Q
    |||||||||||| | |||| |||||||||| |||||||||||||||||||||||     |||||||| ||||||||| || |||||||||||||    
T  20727667 tggttttttctctgattttagagtttccacattatattcttgtgttgtgattgt-----ttattttttttcttcagctctgttatttcctaaca 20727755  T

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Target: chr6; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 14763951 - 14763871
Alignment:
Q  7 gaagcaaagggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagctt 87  Q
    ||||||| ||||||||||| ||||  ||||||| ||| |||||||||||||||||| ||| |||||||| |||||||||||    
T  14763951 gaagcaaggggaagaccaaagctatttattgaatctagtttctttgtttttagatgtaccagtcagtagcactttaagctt 14763871  T

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Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 14766528 - 14766448
Alignment:
Q  7 gaagcaaagggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagctt 87  Q
    ||||||| | ||||||||| |||| |||||||||||| ||| |||||||||||||||||  |||| ||| |||||||||||    
T  14766528 gaagcaaggagaagaccaaggctatatattgaacctagtttttttgtttttagatgcactagtcaatagcactttaagctt 14766448  T

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Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 41341251 - 41341348
Alignment:
Q  99 ggtcctggttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaacag 198  Q
    |||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||    
T  41341251 ggtcatggtttttcctctggttttggagtttccatgttatattcttgtgttgtgattgtgt---ttatttttcttcttcagccctattatttcctaacag 41341347  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 7400375 - 7400279
Alignment:
Q  99 ggtcctggttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 197  Q
    |||| ||||||||||||| ||||| |||||||||| |||||||||| |||||||||||| |||||  |||||||||||| ||||| |||||||||||||    
T  7400375 ggtcatggttttttctcccgttttagagtttccacattatattcttatgttgtgattgtatttat--tttttcttcttcggcccttttatttcctaaca 7400279  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 35428448 - 35428357
Alignment:
Q  7 gaagcaaagggaagaccaatgctacatattgaaccta---atttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 95  Q
    ||||||| ||||||||||| |||| ||||||||||||   ||||||||||||||||||||||| |||||||| ||||||||||||| |||||    
T  35428448 gaagcaatgggaagaccaaggctatatattgaacctagtaatttctttgtttttagatgcaccagtcagtagcactttaagcttatatctga 35428357  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 35430028 - 35429940
Alignment:
Q  7 gaagcaaagggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 95  Q
    ||||||| |||||||||||  ||| |||||||||||| |||||||||||||||| ||||| |||||||| ||||||||||||| |||||    
T  35430028 gaagcaaggggaagaccaagactatatattgaacctagtttctttgtttttagaagcaccagtcagtagcactttaagcttatatctga 35429940  T

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Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 41341037 - 41341125
Alignment:
Q  7 gaagcaaagggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 95  Q
    ||||||| ||||||||||| | || ||||| |||||| |||||||||||||||||||||| |||||||| ||||||||||||| |||||    
T  41341037 gaagcaaggggaagaccaaagttatatattaaacctagtttctttgtttttagatgcaccagtcagtagcactttaagcttatatctga 41341125  T

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Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 7400588 - 7400502
Alignment:
Q  9 agcaaagggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 95  Q
    ||||| |||||||||||  ||| ||||||||||||  ||||||||||||||||||||| |||||||| ||||||||||||| |||||    
T  7400588 agcaaggggaagaccaagactatatattgaacctaggttctttgtttttagatgcaccggtcagtagcactttaagcttatatctga 7400502  T

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Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 35429814 - 35429752
Alignment:
Q  99 ggtcctggttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgttt 161  Q
    |||| |||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||    
T  35429814 ggtcgtggtttttcctctagttttggagtttccacgttatattcttgtgttgtgattgtgttt 35429752  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 7658980 - 7659052
Alignment:
Q  17 gaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttat 89  Q
    |||||||||||||| ||||||||  ||  ||||||||||| ||||| ||| || ||||| |||||||||||||    
T  7658980 gaagaccaatgctatatattgaatttaggttctttgttttcagatgtaccagttagtagcactttaagcttat 7659052  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 170
Target Start/End: Original strand, 7659199 - 7659244
Alignment:
Q  125 agtttccacgttatattcttgtgttgtgattgtgtttattattttt 170  Q
    ||||||||| ||||||||||||||||||||| || ||||| |||||    
T  7659199 agtttccacattatattcttgtgttgtgattatgcttatttttttt 7659244  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 5447768 - 5447675
Alignment:
Q  106 gttttttctccggttttggagtttccacgttatattcttgtgtt-gtgattgtgtttattatttttcttcttcagccctattatttcctaacag 198  Q
    ||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  5447768 gttttttctccggttttagagtttccacattatattcttgtgtttgtgattgtgtttattttttttcttcttcagccctgttatttcctaacag 5447675  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 199
Target Start/End: Complemental strand, 5439760 - 5439661
Alignment:
Q  99 ggtcctggttttttctccggttttggagtttccacgttatattcttgt-gttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 197  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||  ||||||||||||| |||| |||||||||||||    
T  5439760 ggtcatggttttttctacggttttggagtttccacgttatattcttgtatttgtgattgtgtttat--tttttcttcttcaaccctgttatttcctaaca 5439663  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 99 - 199
Target Start/End: Complemental strand, 5448770 - 5448671
Alignment:
Q  99 ggtcctggttttttctccggttttggagtttccacgttatattcttgt-gttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 197  Q
    |||| ||||||||||| |||||||||||||||||| ||||||||||||  ||||||||||||||||  ||||||||||||| |||| |||||||||||||    
T  5448770 ggtcatggttttttctacggttttggagtttccacattatattcttgtatttgtgattgtgtttat--tttttcttcttcaaccctgttatttcctaaca 5448673  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 5448984 - 5448902
Alignment:
Q  7 gaagcaaagggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttat 89  Q
    ||||||| ||||| |||||||||| |||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||    
T  5448984 gaagcaaggggaataccaatgctatatattgaacctagtttctttgtttttagatgcaccagtcagtagcactttaagcttat 5448902  T

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Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 5439974 - 5439892
Alignment:
Q  7 gaagcaaagggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttat 89  Q
    ||||||| ||||| |||||||||| |||||||||||| ||| |||||||||||||||||| |||||||| |||||||||||||    
T  5439974 gaagcaaggggaataccaatgctatatattgaacctagtttatttgtttttagatgcaccagtcagtagcactttaagcttat 5439892  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 198
Target Start/End: Complemental strand, 5438749 - 5438699
Alignment:
Q  148 ttgtgattgtgtttattatttttcttcttcagccctattatttcctaacag 198  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  5438749 ttgtgattgtgtttattttttttcttcttcagccctgttatttcctaacag 5438699  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 15589911 - 15589829
Alignment:
Q  7 gaagcaaagggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttat 89  Q
    ||||||| ||||||||||| |||| |||||||| |||  |||||||| |||||||||||  |||||||| || ||||||||||    
T  15589911 gaagcaaggggaagaccaaggctatatattgaatctaggttctttgtatttagatgcacaggtcagtagcacattaagcttat 15589829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 5438956 - 5438899
Alignment:
Q  32 atattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttat 89  Q
    ||||||||| || |||||||||||||||||||||| |||| ||| |||||||||||||    
T  5438956 atattgaacatagtttctttgtttttagatgcaccagtcaatagcactttaagcttat 5438899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 194
Target Start/End: Complemental strand, 15589694 - 15589602
Alignment:
Q  99 ggtcctggttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttccta 194  Q
    |||| ||| ||||||| ||||||||||||||||| ||||||||||||||   ||||||||    |||||||||||||| |||| | ||||||||||    
T  15589694 ggtcatgggtttttcttcggttttggagtttccaagttatattcttgtgcaatgattgtg---cttatttttcttctttagccatgttatttccta 15589602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 15588578 - 15588511
Alignment:
Q  127 tttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 197  Q
    ||||||||||||||||||||||||||||||||    ||||||||||  || |||||| |||||||||||||    
T  15588578 tttccacgttatattcttgtgttgtgattgtg---cttatttttctattttagccctcttatttcctaaca 15588511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 15588777 - 15588695
Alignment:
Q  7 gaagcaaagggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttat 89  Q
    |||||||  |||||||||| |||| |||||||   ||  ||||||||||||||||||||| |||||||| || ||||||||||    
T  15588777 gaagcaagaggaagaccaaggctatatattgatggtacgttctttgtttttagatgcacctgtcagtagcacgttaagcttat 15588695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 89
Target Start/End: Complemental strand, 5447966 - 5447909
Alignment:
Q  32 atattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttat 89  Q
    ||||||||| || |||||||||| ||||||||||| |||| ||| |||||||||||||    
T  5447966 atattgaacatagtttctttgttcttagatgcaccagtcaatagcactttaagcttat 5447909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 1813580 - 1813543
Alignment:
Q  127 tttccacgttatattcttgtgttgtgattgtgtttatt 164  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  1813580 tttccacattatatttttgtgttgtgattgtgtttatt 1813543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 150
Target Start/End: Complemental strand, 18673810 - 18673778
Alignment:
Q  118 gttttggagtttccacgttatattcttgtgttg 150  Q
    ||||||||||||||||||||| |||||||||||    
T  18673810 gttttggagtttccacgttatgttcttgtgttg 18673778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 6138408 - 6138505
Alignment:
Q  99 ggtcctggttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaacag 198  Q
    |||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||| ||||||||||||||    
T  6138408 ggtcgtggttttttctctagttttggagtttccacgttatattcttgtgttgtgattgtgt---atatttttcttcttcagccctgttatttcctaacag 6138504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 52022349 - 52022435
Alignment:
Q  108 tttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 197  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||    |||||||||||||||| ||||||||||||||||||    
T  52022349 tttttcttcggttttggagtttccacgttatatccttgtgttgtgattgtg---cttatttttcttcttcaaccctattatttcctaaca 52022435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 99 - 195
Target Start/End: Complemental strand, 3742556 - 3742461
Alignment:
Q  99 ggtcctggttttttctccggttttggagtttccacgttatattcttgtg-ttgtgattgtgtttattatttttcttcttcagccctattatttcctaa 195  Q
    |||| |||||||||||| | |||| |||||| ||||||||||||||||| ||||||||||||||||  |||| ||||||||||||| |||||||||||    
T  3742556 ggtcgtggttttttctctgatttttgagttttcacgttatattcttgtgtttgtgattgtgtttat--ttttccttcttcagccctgttatttcctaa 3742461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 52022131 - 52022211
Alignment:
Q  15 gggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 95  Q
    ||||||||||| |||| |||||||||||| |||||||||||||||||||||| |||| ||| |||||||||| || |||||    
T  52022131 gggaagaccaaggctatatattgaacctagtttctttgtttttagatgcaccagtcattagcactttaagctcatatctga 52022211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 6139815 - 6139897
Alignment:
Q  7 gaagcaaagggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttat 89  Q
    ||||||| ||||||||||| |||| ||||||||| || |||||||||||||||||||||| |||| ||  |||||||||||||    
T  6139815 gaagcaaggggaagaccaaggctatatattgaacatagtttctttgtttttagatgcaccggtcaataacactttaagcttat 6139897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 6138206 - 6138282
Alignment:
Q  19 agaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 95  Q
    |||||||  ||| |||||||||||| ||||||||||||| |||||||| |||||||| ||||||||||||| |||||    
T  6138206 agaccaagactatatattgaacctagtttctttgttttttgatgcaccagtcagtagcactttaagcttatatctga 6138282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 5397344 - 5397402
Alignment:
Q  7 gaagcaaagggaagaccaatgctacatattgaacctaatttctttgtttttagatgcac 65  Q
    ||||||||||||||||||| |||| |||||  |||||  ||||||||||||||||||||    
T  5397344 gaagcaaagggaagaccaaggctatatattagacctaggttctttgtttttagatgcac 5397402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 5397541 - 5397619
Alignment:
Q  99 ggtcctggttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagc 180  Q
    |||| ||||||||||| | |||||||||||   || ||||||||||||||||||||| || ||||   ||||||||||||||    
T  5397541 ggtcgtggttttttcttcagttttggagttcttactttatattcttgtgttgtgattttgcttat---ttttcttcttcagc 5397619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 6140037 - 6140079
Alignment:
Q  107 ttttttctccggttttggagtttccacgttatattcttgtgtt 149  Q
    ||||||||| | ||||||||||| |||||||||||||||||||    
T  6140037 ttttttctctgattttggagttttcacgttatattcttgtgtt 6140079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 43834965 - 43835035
Alignment:
Q  18 aagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagctta 88  Q
    ||||| || |||| ||||||||||||| ||||| ||||| ||||||| | |||||||| ||||||| ||||    
T  43834965 aagactaaggctatatattgaacctaagttcttagttttaagatgcatcagtcagtagcactttaaactta 43835035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 17645523 - 17645483
Alignment:
Q  108 tttttctccggttttggagtttccacgttatattcttgtgt 148  Q
    ||||||||||||||| |||||||| | ||||||||||||||    
T  17645523 tttttctccggttttagagtttccgcattatattcttgtgt 17645483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 104 - 199
Target Start/End: Original strand, 3371630 - 3371722
Alignment:
Q  104 tggttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaacagt 199  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||| |   |||||||||||||||||||||||||||||| |||||||    
T  3371630 tggttttttctccggttttggagtttcctcgttatattcttgtgtagtgattgcg---attatttttcttcttcagccctattatttcataacagt 3371722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 17730974 - 17730878
Alignment:
Q  99 ggtcctggttttttc-tccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 197  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||   |||||| |||||||| |||| |||||||||||||    
T  17730974 ggtcgtggttttttcctccggttttggagtttccacgttatattcttgtgttgtgattgtgtt---tattttgcttcttcaaccctgttatttcctaaca 17730878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 19032205 - 19032109
Alignment:
Q  99 ggtcctggttttttc-tccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 197  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||   |||||| |||||||| |||| |||||||||||||    
T  19032205 ggtcgtggttttttcctccggttttggagtttccacgttatattcttgtgttgtgattgtgtt---tattttgcttcttcaaccctgttatttcctaaca 19032109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 43979431 - 43979526
Alignment:
Q  99 ggtcctggttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 197  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||||   ||||||||||||||||||| | |||||||||||||    
T  43979431 ggtcgtggttttttctccagttttggagtttccacgttatattcttgtgtagttattgtgt---ttatttttcttcttcagccatgttatttcctaaca 43979526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 1027011 - 1027105
Alignment:
Q  99 ggtcctggttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaa 195  Q
    |||| |||||||||||| ||||||||||||| |||||||||||| ||| | ||||||||||||||  ||||||||||||| |||| |||||||||||    
T  1027011 ggtcgtggttttttctctggttttggagtttacacgttatattcctgtatagtgattgtgtttat--tttttcttcttcaaccctgttatttcctaa 1027105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 38183228 - 38183140
Alignment:
Q  7 gaagcaaagggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 95  Q
    ||||||| | ||||||||| |||| |||||||| ||| |||||||||||||||||||||| |||||||| ||||||||||||| |||||    
T  38183228 gaagcaaggtgaagaccaaggctatatattgaatctagtttctttgtttttagatgcaccagtcagtagcactttaagcttatatctga 38183140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 106 - 180
Target Start/End: Complemental strand, 38183068 - 38182994
Alignment:
Q  106 gttttttctccggttttggagtttccacgttatattcttgtg-ttgtgattgtgtttattatttttcttcttcagc 180  Q
    ||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  38183068 gttttgtcttcggttttggagtttccacgttatattcttgtgtttgtgattgtgtttatt-tttttcttcttcagc 38182994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 17731189 - 17731101
Alignment:
Q  7 gaagcaaagggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 95  Q
    ||||||| |||||| |||| |||| |||||||||||| ||||||| || ||||||||||| |||||||| ||||||||||||| |||||    
T  17731189 gaagcaaggggaaggccaaggctatatattgaacctagtttctttattgttagatgcaccagtcagtagcactttaagcttatatctga 17731101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 19032420 - 19032332
Alignment:
Q  7 gaagcaaagggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 95  Q
    ||||||| |||||| |||| |||| |||||||||||| ||||||| || ||||||||||| |||||||| ||||||||||||| |||||    
T  19032420 gaagcaaggggaaggccaaggctatatattgaacctagtttctttattgttagatgcaccagtcagtagcactttaagcttatatctga 19032332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 40195750 - 40195803
Alignment:
Q  104 tggttttttctccggttttggagtttccacgttatattcttgtgttgtgattgt 157  Q
    |||||||||||| ||||||||| |||||||||||||||||||| ||||||||||    
T  40195750 tggttttttctctggttttggaatttccacgttatattcttgtattgtgattgt 40195803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 1026796 - 1026883
Alignment:
Q  7 gaagcaaagggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctg 94  Q
    ||||||| ||||| ||||| |||| |||| |||| ||  ||||||||||||||||||||| |||| ||||||| ||||||||| ||||    
T  1026796 gaagcaaggggaataccaaggctatatatcgaacgtaggttctttgtttttagatgcaccagtcaatagtactataagcttatatctg 1026883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 3371405 - 3371487
Alignment:
Q  7 gaagcaaagggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttat 89  Q
    ||||||||||||||||||| |||| ||||| ||||||  ||| ||||||||||||||| | |||| ||| ||||||| |||||    
T  3371405 gaagcaaagggaagaccaaggctatatattaaacctaggttccttgtttttagatgcatcagtcaatagaactttaaacttat 3371487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 21344585 - 21344517
Alignment:
Q  119 ttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattattt 190  Q
    |||| |||||| ||||||||||||||||||||||||||||    |||||||||||||||| || ||||||||    
T  21344585 ttttagagttttcacgttatattcttgtgttgtgattgtg---cttatttttcttcttcaaccttattattt 21344517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 49582603 - 49582680
Alignment:
Q  7 gaagcaaagggaagaccaatgctacatattga-acctaatttctttgtttttagatgcacccgtcagtagtactttaa 83  Q
    ||||||| ||||||||||||| || ||||  | |||||| |||||||||||||||||||   |||||||| |||||||    
T  49582603 gaagcaaggggaagaccaatgttagatataaagacctaagttctttgtttttagatgcattagtcagtagcactttaa 49582680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 21344779 - 21344727
Alignment:
Q  32 atattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaag 84  Q
    ||||||||||||  || ||||||||||||||||||  ||||||| ||||||||    
T  21344779 atattgaacctaggttatttgtttttagatgcaccaatcagtagcactttaag 21344727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 14508946 - 14509036
Alignment:
Q  106 gttttttctccggttttggagtttccacgt--tatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 197  Q
    |||||||||| |||||||||||||||||||  ||||||||||||||||||||||||   ||||||||||||||||||||| |||||||||||||    
T  14508946 gttttttctctggttttggagtttccacgttatatattcttgtgttgtgattgtgt---ttatttttcttcttcagccctgttatttcctaaca 14509036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 14508733 - 14508813
Alignment:
Q  15 gggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 95  Q
    ||||||||||| |||| ||||||||||||  ||||| ||||||||||| ||| |||||||| ||||||||||||| |||||    
T  14508733 gggaagaccaaggctatatattgaacctaggttcttagtttttagatgtaccagtcagtagcactttaagcttatatctga 14508813  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 4528729 - 4528782
Alignment:
Q  107 ttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtt 160  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||    
T  4528729 ttttttctccggtttcgaagtttccacgttatattcttgtgttgtgattatgtt 4528782  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 199
Target Start/End: Original strand, 31322837 - 31322929
Alignment:
Q  108 tttttctccggttttggagtttccacgttatattc------ttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaacagt 199  Q
    |||||||||| ||||||||||||||||||||||||      ||||||||||||||||    ||||||||||||||||||||  |||||||||||||||    
T  31322837 tttttctccgattttggagtttccacgttatattcttgtttttgtgttgtgattgtg---cttatttttcttcttcagccc--ttatttcctaacagt 31322929  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 45676607 - 45676540
Alignment:
Q  127 tttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaaca 197  Q
    ||||||||||||||||||||||| | ||||||||   ||||||||||||||| |||| |||||||||||||    
T  45676607 tttccacgttatattcttgtgttataattgtgtt---tatttttcttcttcaaccctgttatttcctaaca 45676540  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 10550114 - 10550051
Alignment:
Q  32 atattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 95  Q
    ||||||||||||  ||||||||||||||||||||| |||||||| |||||||| |||| |||||    
T  10550114 atattgaacctaggttctttgtttttagatgcaccagtcagtagcactttaagtttatatctga 10550051  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 31327200 - 31327288
Alignment:
Q  7 gaagcaaagggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 95  Q
    |||||||||| ||||||||||||| ||||| ||||||  |||| | |||||| || |||| || ||||| |||||||| |||| |||||    
T  31327200 gaagcaaaggaaagaccaatgctatatattcaacctaggttctctatttttatatacaccagtaagtagcactttaagtttatatctga 31327288  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 31322582 - 31322661
Alignment:
Q  16 ggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 95  Q
    |||||||||| | || |||||| |||||  |||||||||||||||||||||  ||| | | ||||||||||||| |||||    
T  31322582 ggaagaccaaggttatatattggacctaggttctttgtttttagatgcaccattcaatggcactttaagcttatatctga 31322661  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 8445696 - 8445753
Alignment:
Q  139 attcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaacagt 199  Q
    |||||||||| ||||||||||||||   ||||||||| ||||||| || ||||||||||||    
T  8445696 attcttgtgtagtgattgtgtttat---ttttcttctgcagccctgttgtttcctaacagt 8445753  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 4660230 - 4660143
Alignment:
Q  7 gaagcaaagggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 95  Q
    ||||||| |||||||||||||||| |||||||||||| ||||||||||||| |||||||| |||||||| |||||||| |||| |||||    
T  4660230 gaagcaaggggaagaccaatgctatatattgaacctagtttctttgttttt-gatgcaccggtcagtagcactttaagattatatctga 4660143  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 20594841 - 20594922
Alignment:
Q  106 gttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattattt 190  Q
    |||||||||  | ||||||||||| |||||||||||||||||||||||||||||   ||||||||||||||||||||| ||||||    
T  20594841 gttttttctttgattttggagttttcacgttatattcttgtgttgtgattgtgt---ttatttttcttcttcagcccttttattt 20594922  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 33301020 - 33300962
Alignment:
Q  106 gttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttatt 164  Q
    |||||| ||||| ||||  ||||| ||||||||||||||||||||||||||||||||||    
T  33301020 gtttttcctccgattttaaagttttcacgttatattcttgtgttgtgattgtgtttatt 33300962  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 20594616 - 20594704
Alignment:
Q  7 gaagcaaagggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 95  Q
    ||||||| |||||||||||  ||| ||||||||||||  |||||| |||||||||||||| |||| ||  ||| ||||||||| |||||    
T  20594616 gaagcaaggggaagaccaagactatatattgaacctaggttctttatttttagatgcaccggtcaataacactctaagcttatatctga 20594704  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 7371844 - 7371881
Alignment:
Q  104 tggttttttctccggttttggagtttccacgttatatt 141  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  7371844 tggttttttctccggttttagagtttccacgttatatt 7371881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 38472142 - 38472183
Alignment:
Q  108 tttttctccggttttggagtttccacgttatattcttgtgtt 149  Q
    |||||||||||||| | |||||||||||||| ||||||||||    
T  38472142 tttttctccggtttggaagtttccacgttatgttcttgtgtt 38472183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 10751298 - 10751342
Alignment:
Q  103 ctggttttttctccggttttggag-tttccacgttatattcttgt 146  Q
    |||||||||||||| ||||||||| |||| |||||||||||||||    
T  10751298 ctggttttttctccagttttggagttttcaacgttatattcttgt 10751342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 33300948 - 33300900
Alignment:
Q  99 ggtcctggttttttctccggttttggagtttccacgttatattcttgtg 147  Q
    |||| ||||||||||| || || |||||||||||| |||||||||||||    
T  33300948 ggtcgtggttttttcttcgattgtggagtttccacattatattcttgtg 33300900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 33302495 - 33302436
Alignment:
Q  137 atattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaacagt 199  Q
    ||||||||||||||||||||   |  ||||||||||||||||||  | |||||||||||||||    
T  33302495 atattcttgtgttgtgattg---tacttatttttcttcttcagctatgttatttcctaacagt 33302436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 392431 - 392343
Alignment:
Q  7 gaagcaaagggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 95  Q
    ||||||| ||||||||||| |||| ||||||||| || ||||||||||||||||| || | || ||||| ||||||||||||| |||||    
T  392431 gaagcaaggggaagaccaaggctatatattgaacgtagtttctttgtttttagatacatcagttagtagcactttaagcttatatctga 392343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 107 - 199
Target Start/End: Complemental strand, 7284504 - 7284415
Alignment:
Q  107 ttttttctccggttttggagtttccacgttatattcttgtgttgtgattgtgtttattatttttcttcttcagccctattatttcctaacagt 199  Q
    ||||||||||  ||||| ||||||||||||||||||||||||| ||||| ||    |||||||||||||||||| || ||||||| |||||||    
T  7284504 ttttttctccaattttgaagtttccacgttatattcttgtgttatgattatg---cttatttttcttcttcagctctgttatttcttaacagt 7284415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 7278175 - 7278087
Alignment:
Q  7 gaagcaaagggaagaccaatgctacatattgaacctaatttctttgtttttagatgcacccgtcagtagtactttaagcttatctctga 95  Q
    ||||||| |||| |||||   ||| |||||| |||||  |||||||||| |||||||||| |||||||| ||||||||||||| |||||    
T  7278175 gaagcaatgggaggaccatgactatatattggacctaggttctttgtttgtagatgcaccagtcagtagcactttaagcttatatctga 7278087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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