View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3436_low_6 (Length: 221)

Name: NF3436_low_6
Description: NF3436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3436_low_6
NF3436_low_6
[»] chr7 (3 HSPs)
chr7 (17-204)||(3930038-3930225)
chr7 (17-197)||(3928693-3928873)
chr7 (50-204)||(21317471-21317625)
[»] chr2 (1 HSPs)
chr2 (23-204)||(13576218-13576399)
[»] chr8 (6 HSPs)
chr8 (17-204)||(43479751-43479938)
chr8 (53-195)||(38799395-38799537)
chr8 (53-195)||(38821980-38822122)
chr8 (53-205)||(25865600-25865752)
chr8 (29-204)||(26592044-26592219)
chr8 (95-201)||(41943886-41943992)
[»] chr5 (4 HSPs)
chr5 (17-204)||(12531356-12531543)
chr5 (17-204)||(12547076-12547263)
chr5 (129-204)||(9866734-9866809)
chr5 (119-195)||(9894610-9894685)
[»] scaffold0197 (1 HSPs)
scaffold0197 (50-204)||(30909-31062)
[»] chr4 (4 HSPs)
chr4 (23-201)||(24860416-24860594)
chr4 (113-153)||(44771097-44771137)
chr4 (59-138)||(40035830-40035909)
chr4 (53-148)||(34748655-34748750)
[»] chr1 (2 HSPs)
chr1 (101-186)||(17769257-17769342)
chr1 (101-186)||(1539209-1539294)
[»] chr3 (1 HSPs)
chr3 (102-186)||(27440846-27440930)


Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 3930225 - 3930038
Alignment:
Q  17 cacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttc 116  Q
    ||||||||||||||||||||||||||| | || || ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3930225 cacagattccgtccaggaacagtcgcacttcgtgagatccgcaagtatcagaagagcactgaacttctcattaggaaacttccattccaaagattggttc 3930126  T
Q  117 gtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgt 204  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3930125 gtgaaatcgctcaggatttcaaaactgatcttcgatttcagagtagtgctgtttctgctcttcaagaagctgctgaagcgtatcttgt 3930038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 3928873 - 3928693
Alignment:
Q  17 cacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttc 116  Q
    ||||||||| | |||||||||||||||||||| |||||| | |||||||| |||| ||||||||||||||||||||||||||| ||| ||||||||||||    
T  3928873 cacagattcagaccaggaacagtcgcattgcgtgaaatcaggaagtatcaaaagatcactgagcttctcattaggaaacttcctttcaaaagattggttc 3928774  T
Q  117 gtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgt 197  Q
     ||||||||||||||||||||||||||||||| |||| ||||  || ||||||||||| |||||||||   ||||||||||    
T  3928773 atgaaatcgctcaggatttcaaaactgatctccgattccagatcagcgctgtttctgctcttcaagaaatcgctgaagcgt 3928693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 50 - 204
Target Start/End: Original strand, 21317471 - 21317625
Alignment:
Q  50 gaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctca 149  Q
    |||||||| ||||| |||||||||||||||||||| || || ||||||||||||||| |  | ||||||||||||||||||||||||||||| |||||||    
T  21317471 gaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctca 21317570  T
Q  150 gatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgt 204  Q
    |||| ||||| |||||||||||||| ||||||||||| |||||||| ||||||||    
T  21317571 gattccagagcagtgctgtttctgctcttcaagaagcggctgaagcttatcttgt 21317625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 23 - 204
Target Start/End: Original strand, 13576218 - 13576399
Alignment:
Q  23 ttccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaa 122  Q
    |||||||| ||||| |||||  | || |||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  13576218 ttccgtcctggaaccgtcgctcttcgtgaaatccgcaagtatcagaagagcaccgagcttctcataaggaagcttccattccaaagattggttcgagaaa 13576317  T
Q  123 tcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgt 204  Q
    | ||||||||||||||||| |||||| | ||||| || |||||||||||||| |||||||||||||||||||| ||||||||    
T  13576318 ttgctcaggatttcaaaacggatctccgttttcaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgt 13576399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 5e-52; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 43479938 - 43479751
Alignment:
Q  17 cacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttc 116  Q
    |||||||||||||| ||||| || ||  | || || ||||| |||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||     
T  43479938 cacagattccgtcctggaactgttgctcttcgtgagatccgcaagtatcagaagagtaccgagcttctcatcaggaagcttccattccaaagattggtta 43479839  T
Q  117 gtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgt 204  Q
    | |||||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||| |||||||| ||||||||    
T  43479838 gggaaatcgctcaggatttcaaaactgatctcaggttccagagtagcgctgtttctgctcttcaagaagccgctgaagcttatcttgt 43479751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 53 - 195
Target Start/End: Original strand, 38799395 - 38799537
Alignment:
Q  53 atccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagat 152  Q
    ||||| |||||||||||||||||||||||||||||  | ||||||||||||||| |  | ||||||||||| ||||| |||||||| || ||||| ||||    
T  38799395 atccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagat 38799494  T
Q  153 ttcagagtagtgctgtttctgcacttcaagaagctgctgaagc 195  Q
    | ||||| || || ||||| || ||||||||||||||||||||    
T  38799495 tccagagcagcgcagtttccgctcttcaagaagctgctgaagc 38799537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 53 - 195
Target Start/End: Complemental strand, 38822122 - 38821980
Alignment:
Q  53 atccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagat 152  Q
    ||||| |||||||||||||||||||||||||||||  | ||||||||||||||| |  | ||||||||||| ||||| |||||||| || ||||| ||||    
T  38822122 atccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagat 38822023  T
Q  153 ttcagagtagtgctgtttctgcacttcaagaagctgctgaagc 195  Q
    | ||||| || || ||||| || ||||||||||||||||||||    
T  38822022 tccagagcagcgcagtttccgctcttcaagaagctgctgaagc 38821980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 53 - 205
Target Start/End: Original strand, 25865600 - 25865752
Alignment:
Q  53 atccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagat 152  Q
    ||||| |||||||||||||| ||||||||| | ||  | || |||||||||||  |  | ||||||||||| ||||||||||||||||| ||||| ||||    
T  25865600 atccgtaagtatcagaagagtactgagcttttgatccgtaagcttccattccagcgtcttgttcgtgaaattgctcaggatttcaaaacggatctgagat 25865699  T
Q  153 ttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgtg 205  Q
    ||||||||  |||||||  ||||||||| ||||||||||| || |||||||||    
T  25865700 ttcagagtcatgctgttcttgcacttcaggaagctgctgaggcttatcttgtg 25865752  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 204
Target Start/End: Original strand, 26592044 - 26592219
Alignment:
Q  29 ccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctc 128  Q
    |||||||| |||||| | || || ||||| ||||| ||||||||||| || ||||||||| | |||||||| |||||  |  | |||||||| || ||||    
T  26592044 ccaggaaccgtcgcactccgtgagatccgcaagtaccagaagagcaccgaacttctcattcgcaaacttcctttccagcgtcttgttcgtgagattgctc 26592143  T
Q  129 aggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgt 204  Q
    |||||||||| || |||||| | ||||||||   |||||| || || || |||||||| || || || ||||||||    
T  26592144 aggatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatcttgt 26592219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 201
Target Start/End: Original strand, 41943886 - 41943992
Alignment:
Q  95 cttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaag 194  Q
    |||||||||||| |  | ||||||||||| ||||| |||||||| || ||||||||||| |||||   |||||||  ||||||||| ||||| || ||||    
T  41943886 cttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacggatctcagattccagagccatgctgttcttgcacttcaggaagcagcagaag 41943985  T
Q  195 cgtatct 201  Q
    | |||||    
T  41943986 cttatct 41943992  T

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Target: chr5 (Bit Score: 92; Significance: 7e-45; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 12531356 - 12531543
Alignment:
Q  17 cacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttc 116  Q
    |||||||||||||||||||| || ||| | || || ||||| ||||| ||||||||||| |||||||| || ||||| ||||||||||| ||  | ||||    
T  12531356 cacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttgttc 12531455  T
Q  117 gtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgt 204  Q
    ||||||||||||| ||||||||||| |||||| |||| || || |||||||||||||| |||||||||||||||||||| ||||||||    
T  12531456 gtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgt 12531543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 12547263 - 12547076
Alignment:
Q  17 cacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttc 116  Q
    |||||||||||||||||||| || ||| | || || ||||| ||||| ||||||||||| |||||||| || ||||| ||||||||||| ||  | ||||    
T  12547263 cacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttgttc 12547164  T
Q  117 gtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgt 204  Q
    ||||||||||||| ||||||||||| |||||| |||| || || |||||||||||||| |||||||||||||||||||| ||||||||    
T  12547163 gtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgt 12547076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 9866809 - 9866734
Alignment:
Q  129 aggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgt 204  Q
    |||||||||| |||||||| || ||  ||||||||| ||||||||| ||||||||||||||| |||  ||||||||    
T  9866809 aggatttcaagactgatctgaggttctagagtagtgatgtttctgctcttcaagaagctgctaaagactatcttgt 9866734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 9894610 - 9894685
Alignment:
Q  119 gaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagc 195  Q
    ||||| |||||||||| ||| |||| ||| || || ||||||||||||||||||||  ||||||||| || ||||||    
T  9894610 gaaattgctcaggatt-caagactggtctgaggttccagagtagtgctgtttctgctgttcaagaagttgttgaagc 9894685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 50 - 204
Target Start/End: Original strand, 30909 - 31062
Alignment:
Q  50 gaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctca 149  Q
    |||||||| ||||| |||||||||||||||||||| || || ||||||| ||||||| |  | |||||||||||||||||||||||||||||  ||||||    
T  30909 gaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc-attccaacgtcttgttcgtgaaatcgctcaggatttcaaaacctatctca 31007  T
Q  150 gatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgt 204  Q
    |||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||    
T  31008 gattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgt 31062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 24860416 - 24860594
Alignment:
Q  23 ttccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaa 122  Q
    |||||||| ||||| || ||| | ||||||||||| ||||| || || ||||| |||||||||||  | ||||||||||||||| |  | ||||||||||    
T  24860416 ttccgtcccggaaccgttgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaa 24860515  T
Q  123 tcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatct 201  Q
    ||||||| ||||||||||| |||||| | || |||||||| ||||||||||| |||||||||||||||||||| |||||    
T  24860516 tcgctcaagatttcaaaaccgatctccgtttccagagtagcgctgtttctgctcttcaagaagctgctgaagcttatct 24860594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 44771137 - 44771097
Alignment:
Q  113 gttcgtgaaatcgctcaggatttcaaaactgatctcagatt 153  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  44771137 gttcgtgaaatcgctcaggatttcaaaaccgatctcagatt 44771097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 40035830 - 40035909
Alignment:
Q  59 aagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaa 138  Q
    |||||||||||||| ||||||||  | || ||||| || |||||||| || |||||||||||||| |||||||| |||||    
T  40035830 aagtatcagaagagtactgagctcttgatcaggaagctcccattccagaggttggttcgtgaaattgctcaggacttcaa 40035909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 148
Target Start/End: Original strand, 34748655 - 34748750
Alignment:
Q  53 atccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctc 148  Q
    ||||| ||||| ||||||||||| || || |||||  | ||||| || |||||  |  |||||||||| ||||||||||||||||| |||||||||    
T  34748655 atccgtaagtaccagaagagcaccgaactcctcatccgcaaactccccttccagcgtctggttcgtgagatcgctcaggatttcaagactgatctc 34748750  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 17769342 - 17769257
Alignment:
Q  101 ttccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagc 186  Q
    ||||||||||| ||| | |||||| |  ||||||||||||| |||||| ||||| |||||||| |||||||||| |||||||||||    
T  17769342 ttccaaagatttgttagagaaatcacgaaggatttcaaaacagatctccgattttagagtagtactgtttctgctcttcaagaagc 17769257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 1539294 - 1539209
Alignment:
Q  101 ttccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagc 186  Q
    ||||||||||| ||| | |||||| |  || |||||||||| |||||| ||||| |||||||| |||||||| | |||||||||||    
T  1539294 ttccaaagatttgttagagaaatcacgaagtatttcaaaacagatctccgattttagagtagtactgtttcttctcttcaagaagc 1539209  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 27440846 - 27440930
Alignment:
Q  102 tccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagc 186  Q
    |||||||||| ||| | |||||| |  ||||||||||||| |||||| ||||| |||||||   ||||||||| |||||||||||    
T  27440846 tccaaagatttgttagagaaatcacgaaggatttcaaaacagatctccgattttagagtagcattgtttctgctcttcaagaagc 27440930  T

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