View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3436_low_7 (Length: 207)
Name: NF3436_low_7
Description: NF3436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3436_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 18741546 - 18741720
Alignment:
| Q |
17 |
aaatatgaacaacacataattctattttacactaactacacattaaataatacatacagacaaaatcaccataagaaatcaagtgagtaatgaatacaga |
116 |
Q |
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||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18741546 |
aaatatgaacaacacataactctattttacactgactatacattaaataatacatatagacaaaatcaccataagaaatcaagtgagtaatgaataaaga |
18741645 |
T |
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| Q |
117 |
acctagatgaccaggaagcacaaacattctatctctcttatactcctctttcaaatatctactaacccaaaaatt |
191 |
Q |
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||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
18741646 |
acctagatgaccaggaagcgcaaacattctatctctcttagattcctctttcaaatatctactaacccaaaaatt |
18741720 |
T |
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